Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.72□□□□□ -1.65
MSH4O15457 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.72□□□□□ -1.65
MSH4O15457 AC022655.2-201ENST00000577280 318 ntBASIC4.72□□□□□ -1.65
MSH4O15457 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.72□□□□□ -1.65
MSH4O15457 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.72□□□□□ -1.65
MSH4O15457 AC020910.2-201ENST00000603635 610 ntBASIC4.72□□□□□ -1.65
MSH4O15457 AC012557.1-201ENST00000607115 611 ntBASIC4.72□□□□□ -1.65
MSH4O15457 RNU6-368P-201ENST00000620928 107 ntBASIC4.72□□□□□ -1.65
MSH4O15457 RNU6-538P-201ENST00000622329 107 ntBASIC4.72□□□□□ -1.65
MSH4O15457 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.72□□□□□ -1.65
MSH4O15457 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.72□□□□□ -1.65
MSH4O15457 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSH4O15457 OR10AB1P-202ENST00000641219 1686 ntBASIC4.72□□□□□ -1.65
MSH4O15457 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.72□□□□□ -1.65
MSH4O15457 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
MSH4O15457 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSH4O15457 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.72□□□□□ -1.65
MSH4O15457 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.72□□□□□ -1.65
MSH4O15457 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
MSH4O15457 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
MSH4O15457 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
MSH4O15457 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 MIR365B-201ENST00000362317 111 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AL022722.2-201ENST00000402519 180 ntBASIC4.71□□□□□ -1.66
MSH4O15457 RNA5SP317-201ENST00000410176 116 ntBASIC4.71□□□□□ -1.66
MSH4O15457 RN7SKP199-201ENST00000410325 305 ntBASIC4.71□□□□□ -1.66
MSH4O15457 RNA5SP311-201ENST00000411290 116 ntBASIC4.71□□□□□ -1.66
MSH4O15457 PDSS1P1-201ENST00000422953 1114 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AL356276.2-201ENST00000435919 558 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH4O15457 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH4O15457 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH4O15457 RNA5SP315-201ENST00000516340 116 ntBASIC4.71□□□□□ -1.66
MSH4O15457 RNA5SP312-201ENST00000517068 116 ntBASIC4.71□□□□□ -1.66
MSH4O15457 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.71□□□□□ -1.66
MSH4O15457 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.71□□□□□ -1.66
MSH4O15457 AC064801.1-201ENST00000612025 407 ntBASIC4.71□□□□□ -1.66
MSH4O15457 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 MIR7151-201ENST00000617477 60 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AC068831.8-201ENST00000620171 435 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AC138907.10-201ENST00000623708 983 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AC090506.2-201ENST00000624521 419 ntBASIC4.71□□□□□ -1.66
MSH4O15457 AC021242.1-201ENST00000507315 2035 ntBASIC4.71□□□□□ -1.66
MSH4O15457 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.71□□□□□ -1.66
MSH4O15457 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH4O15457 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.71□□□□□ -1.66
MSH4O15457 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 OR13Z1P-201ENST00000416141 834 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 AL392003.1-201ENST00000434394 243 ntBASIC4.7□□□□□ -1.66
MSH4O15457 OR4C10P-201ENST00000434991 931 ntBASIC4.7□□□□□ -1.66
MSH4O15457 GSTA7P-201ENST00000438425 448 ntBASIC4.7□□□□□ -1.66
MSH4O15457 RPL23AP46-201ENST00000438548 490 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 RPL31P53-201ENST00000457065 348 ntBASIC4.7□□□□□ -1.66
MSH4O15457 RPS7P7-201ENST00000463499 571 ntBASIC4.7□□□□□ -1.66
MSH4O15457 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 OR7E10P-201ENST00000526420 991 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.7□□□□□ -1.66
MSH4O15457 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH4O15457 SNORD39.2-201ENST00000579995 76 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.7□□□□□ -1.66
MSH4O15457 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC023043.4-201ENST00000612081 449 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC015922.4-201ENST00000612568 690 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AL590410.1-201ENST00000617925 333 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AL391597.1-201ENST00000618707 694 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC074140.1-201ENST00000621617 208 ntBASIC4.7□□□□□ -1.66
MSH4O15457 AC016717.3-201ENST00000624730 554 ntBASIC4.7□□□□□ -1.66
MSH4O15457 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.7□□□□□ -1.66
MSH4O15457 DDX18P4-201ENST00000511690 1966 ntBASIC4.7□□□□□ -1.66
MSH4O15457 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH4O15457 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH4O15457 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.69□□□□□ -1.66
MSH4O15457 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms