Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 RNA5SP502-201ENST00000362694 119 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 AC019155.1-201ENST00000382242 574 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 RNU6-178P-201ENST00000384631 104 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 MIR659-201ENST00000384963 97 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 RNU6-244P-201ENST00000391028 104 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 GLULP6-201ENST00000399502 913 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 RPS26P47-201ENST00000427219 348 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 MTCO3P21-201ENST00000430791 643 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 AC069285.2-201ENST00000440210 275 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 CEACAMP9-201ENST00000442990 513 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 NDUFA12P1-201ENST00000455914 406 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 AC005008.1-201ENST00000456151 612 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 DEFB109F-201ENST00000491870 277 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 RNU6-889P-201ENST00000517189 103 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 AL121873.1-201ENST00000616013 524 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 AC015908.5-201ENST00000623289 343 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 Z98755.1-201ENST00000407015 1384 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 HSPD1P11-201ENST00000508643 1702 ntBASIC4.49□□□□□ -1.69
VPS35Q96QK1 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS35Q96QK1 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
VPS35Q96QK1 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC006971.1-201ENST00000407916 4486 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AP000756.2-201ENST00000624168 2567 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 MFSD8-242ENST00000641690 4199 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 RNU6-984P-201ENST00000363236 109 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 VDAC1P9-201ENST00000412766 841 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 RPS27AP7-201ENST00000422792 455 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AP001324.1-201ENST00000428553 399 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 CNOT7P1-201ENST00000429006 852 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 ELOCP10-201ENST00000440624 327 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC023512.1-201ENST00000444513 499 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 HMGB1P3-201ENST00000502802 616 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 NDUFB4P12-201ENST00000513465 390 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 RNA5SP446-201ENST00000515955 82 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC023158.1-201ENST00000561632 1025 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC005229.3-201ENST00000603438 323 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC093765.1-201ENST00000603758 881 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 ELOCP34-201ENST00000604436 327 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC008966.2-201ENST00000606157 453 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC100814.1-201ENST00000606963 623 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AL391834.1-201ENST00000609609 560 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC015813.4-201ENST00000610469 179 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC026368.1-201ENST00000614934 690 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AP005019.3-201ENST00000620418 560 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 AL356121.2-201ENST00000624715 780 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 LINC01808-202ENST00000641680 1116 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS35Q96QK1 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS35Q96QK1 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.48□□□□□ -1.69
VPS35Q96QK1 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms