Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RPL6P29-201ENST00000414863 865 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 P2RY10P2-201ENST00000416730 913 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AL590609.2-201ENST00000421430 368 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 HSPE1P22-201ENST00000456856 327 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 RPL7P32-201ENST00000457119 744 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 RN7SL98P-201ENST00000462271 300 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 NDUFA5P12-201ENST00000503796 343 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC018797.3-201ENST00000513388 1241 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AP001804.2-201ENST00000533932 910 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 RN7SL753P-201ENST00000581238 290 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 MIR4480-201ENST00000582492 71 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 MIR6719-201ENST00000622428 87 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC42Q96M95 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC42Q96M95 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC42Q96M95 ASNSP1-201ENST00000518311 1939 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC42Q96M95 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC42Q96M95 OR11H5P-202ENST00000641612 1325 ntBASIC4.46□□□□□ -1.7
CCDC42Q96M95 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC093311.1-201ENST00000506586 2021 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 AL035419.1-201ENST00000397037 564 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 RN7SKP278-201ENST00000410504 342 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 NRBF2P2-201ENST00000413087 861 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 MTND2P11-201ENST00000423638 648 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 RPL23AP46-201ENST00000438548 490 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC073264.2-201ENST00000448886 166 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AL513533.1-201ENST00000453728 415 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 RPL36AP13-201ENST00000457490 317 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC109327.1-201ENST00000471666 403 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC096741.1-201ENST00000472250 846 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 RN7SL809P-201ENST00000482040 297 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 RN7SL810P-201ENST00000493031 276 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 RNA5SP519-201ENST00000516480 119 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 AP006289.1-201ENST00000538089 277 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC079171.1-201ENST00000568788 914 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 RPL23AP87-202ENST00000573039 466 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 RPL12P25-202ENST00000598100 674 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 AC008536.1-201ENST00000602872 669 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 FAM27D1-201ENST00000612308 341 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC42Q96M95 ERCC6-202ENST00000374127 1782 ntBASIC4.45□□□□□ -1.7
CCDC42Q96M95 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC42Q96M95 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 AL158163.1-201ENST00000603915 1649 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC42Q96M95 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC42Q96M95 RNU6-178P-201ENST00000384631 104 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 MIR129-1-201ENST00000384972 72 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 RPL23AP1-201ENST00000428990 471 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 AC011742.1-201ENST00000431448 434 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC42Q96M95 VN1R25P-201ENST00000443385 738 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 VN1R40P-201ENST00000455196 941 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 RPL31P61-201ENST00000496160 376 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms