Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RAD1P1-201ENST00000231383 813 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 RNU4-39P-201ENST00000362455 127 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 RNU4-4P-201ENST00000364588 130 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 RNU1-106P-201ENST00000384382 164 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AL136116.2-201ENST00000404020 785 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 VDAC1P9-201ENST00000412766 841 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 GJA6P-201ENST00000415117 1042 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 RBMY2KP-201ENST00000418221 992 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 FO393419.3-201ENST00000428741 282 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 MTCYBP21-201ENST00000443300 1113 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 RPL7P61-201ENST00000451721 751 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 FGF7P3-201ENST00000454645 303 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC096992.1-201ENST00000459808 709 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 SNX5P1-201ENST00000505757 1041 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 VWA8P1-201ENST00000510889 176 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 COX6B1P6-201ENST00000522347 255 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 CYCSP28-201ENST00000534284 321 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC134349.2-201ENST00000535136 910 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC135001.1-201ENST00000544546 283 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AL352979.3-201ENST00000553515 247 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC007424.1-203ENST00000554613 687 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 CBX3P2-202ENST00000583365 535 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC069304.3-201ENST00000603938 1084 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC024940.4-201ENST00000605507 246 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC015849.2-201ENST00000605738 409 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC133644.2-201ENST00000608142 540 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 Mico1.1-201ENST00000611698 204 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AP001784.1-201ENST00000624107 428 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 AC055839.1-201ENST00000634467 498 ntBASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
ZNF540Q8NDQ6 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC010300.1-201ENST00000600671 5134 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AL035419.1-201ENST00000397037 564 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 VN1R37P-201ENST00000419096 748 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 PDSS1P1-201ENST00000422953 1114 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AL035458.1-201ENST00000433096 585 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AL935212.3-201ENST00000450729 284 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 HIGD1AP8-201ENST00000453927 274 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 RPL7AP28-201ENST00000464513 571 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 RPL23AP71-201ENST00000470966 469 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 ECM1P2-201ENST00000503354 1577 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 NOL8P1-201ENST00000508336 3529 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC005351.1-201ENST00000511152 786 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC004980.4-201ENST00000513375 203 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC074029.1-201ENST00000552531 1044 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 A2MP1-204ENST00000566278 4130 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 MIR3934-201ENST00000579806 107 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC005255.1-201ENST00000593748 216 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 RNA5SP108-201ENST00000605921 117 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC091979.2-201ENST00000607514 214 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 MIR6864-201ENST00000617935 70 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC091905.4-201ENST00000623432 202 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 MAPK10-286ENST00000641208 8747 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 AC008725.1-201ENST00000605123 2263 ntBASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
ZNF540Q8NDQ6 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 AP001002.1-201ENST00000625148 1513 ntBASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
ZNF540Q8NDQ6 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms