Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC012417.1-201ENST00000582307 1039 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.61□□□□□ -1.51
USP39Q53GS9 VN1R83P-201ENST00000595685 445 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 AC018809.2-201ENST00000602436 3823 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 AC104785.1-201ENST00000603220 588 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 MTCYBP22-201ENST00000603788 447 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 AL031281.1-201ENST00000604049 488 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 AC091965.4-201ENST00000607691 587 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.61□□□□□ -1.51
USP39Q53GS9 AL159169.2-201ENST00000610061 1269 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 FRG1HP-204ENST00000617940 757 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.61□□□□□ -1.51
USP39Q53GS9 OR1S1-201ENST00000624470 978 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.61□□□□□ -1.51
USP39Q53GS9 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP39Q53GS9 AC009962.1-201ENST00000567327 3813 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.61□□□□□ -1.51
USP39Q53GS9 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.61□□□□□ -1.51
USP39Q53GS9 AL031595.2-201ENST00000624215 19071 ntBASIC5.61□□□□□ -1.51
USP39Q53GS9 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
USP39Q53GS9 TTC39DP-201ENST00000416781 1688 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RNA5SP305-201ENST00000362665 119 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RNU6-1331P-201ENST00000363658 106 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RNA5SP335-201ENST00000363817 110 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RN7SKP103-201ENST00000363848 320 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC5.6□□□□□ -1.51
USP39Q53GS9 Y_RNA.560-201ENST00000384689 102 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RNU6-932P-201ENST00000391108 106 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC002524.1-201ENST00000411687 547 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 BTF3P8-201ENST00000414577 526 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 CDK8P2-201ENST00000415020 547 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL354868.1-201ENST00000417077 482 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RBMY2KP-201ENST00000418221 992 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 NIPA2P1-201ENST00000426223 976 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.6□□□□□ -1.51
USP39Q53GS9 OR6D1P-201ENST00000436165 939 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 RAB9AP5-201ENST00000437794 597 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 RAB9AP2-201ENST00000443911 597 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL627224.1-201ENST00000448334 444 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RPS23P9-201ENST00000448848 438 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 RHEBP2-201ENST00000450289 600 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.6□□□□□ -1.51
USP39Q53GS9 SUMO1P1-201ENST00000497904 306 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 ARL4AP1-201ENST00000503220 705 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC113430.1-201ENST00000506872 718 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC005178.1-201ENST00000508392 440 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC008885.2-201ENST00000509506 930 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 CDC42P4-201ENST00000510507 563 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AP000676.2-201ENST00000529711 301 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 DEFB130C-202ENST00000530001 230 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL139174.1-201ENST00000531489 886 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.6□□□□□ -1.51
USP39Q53GS9 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC010198.2-201ENST00000550612 259 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AL121839.1-201ENST00000556233 1185 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC087683.1-201ENST00000591187 441 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 AC090181.2-201ENST00000602975 672 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC100793.4-201ENST00000613683 429 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC006840.1-201ENST00000623069 542 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AL359757.1-201ENST00000623176 255 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 AC074101.1-201ENST00000637861 241 ntBASIC5.6□□□□□ -1.51
USP39Q53GS9 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.6□□□□□ -1.51
USP39Q53GS9 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
USP39Q53GS9 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP39Q53GS9 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
USP39Q53GS9 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 AL606537.1-201ENST00000607258 2011 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP39Q53GS9 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC5.59□□□□□ -1.51
USP39Q53GS9 RNU6-1119P-201ENST00000384349 108 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 SNORA67-201ENST00000384423 137 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 MIR130A-201ENST00000385274 89 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 MT-TH-201ENST00000387441 69 ntBASIC5.59□□□□□ -1.51
USP39Q53GS9 RNA5SP91-201ENST00000390902 119 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms