Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 COPS8P2-201ENST00000473228 627 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 METTL15P1-201ENST00000481421 1045 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 RPL23AP72-201ENST00000492447 435 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 RPL31P61-201ENST00000496160 376 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 FTH1P9-201ENST00000513251 355 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 AC010342.1-201ENST00000514047 877 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 RN7SKP276-201ENST00000516242 268 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 SOX5P1-201ENST00000524155 1127 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 AC063950.1-201ENST00000552036 308 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC3.16□□□□□ -1.9
FOXA3P55318 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA3P55318 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA3P55318 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA3P55318 BGLT3-201ENST00000564523 994 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA3P55318 AL021997.2-201ENST00000615674 271 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 AC244205.2-202ENST00000635781 342 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXA3P55318 AC009452.1-201ENST00000640823 606 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 MFSD8-216ENST00000641147 4009 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
FOXA3P55318 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.15□□□□□ -1.9
FOXA3P55318 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA3P55318 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
FOXA3P55318 AC009313.2-201ENST00000417893 1941 ntBASIC3.15□□□□□ -1.9
FOXA3P55318 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
FOXA3P55318 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 AC006504.1-201ENST00000562493 3666 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 U8.4-201ENST00000363626 134 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA3P55318 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA3P55318 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 MIR1179-201ENST00000408703 91 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA3P55318 AC022022.1-201ENST00000430304 178 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC087650.1-201ENST00000431445 468 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 RPL5P32-201ENST00000454085 879 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 SNRPGP5-201ENST00000456003 220 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC053481.1-201ENST00000467217 306 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 AC037198.2-201ENST00000478845 733 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 RPL7P51-201ENST00000490532 749 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC008953.1-201ENST00000497334 318 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC104109.1-201ENST00000498563 436 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA3P55318 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.15□□□□□ -1.91
FOXA3P55318 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA3P55318 AC021006.3-201ENST00000530771 192 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA3P55318 AC021483.2-201ENST00000567415 758 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 MIR1269B-201ENST00000580405 75 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA3P55318 AC110741.2-201ENST00000605278 268 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC009163.6-201ENST00000612367 342 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 MIR6853-201ENST00000619642 74 ntBASIC3.15□□□□□ -1.91
FOXA3P55318 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
FOXA3P55318 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
FOXA3P55318 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.15□□□□□ -1.91
FOXA3P55318 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
FOXA3P55318 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA3P55318 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 OR11H4-201ENST00000315409 1082 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AL590240.1-201ENST00000334118 313 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 MT-RNR1-201ENST00000389680 954 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC097374.1-203ENST00000400783 485 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 RNA5SP113-201ENST00000410486 84 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 RN7SKP100-201ENST00000411258 284 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AP000534.2-201ENST00000412729 568 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC3.14□□□□□ -1.91
FOXA3P55318 AL138785.1-201ENST00000425821 331 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 VDAC1P6-201ENST00000430062 855 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC096638.2-201ENST00000434965 711 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA3P55318 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA3P55318 RN7SL93P-201ENST00000463035 293 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 RN7SL174P-201ENST00000475578 289 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC068305.1-201ENST00000497406 726 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 BTF3L4P4-201ENST00000506381 449 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 RNA5SP92-201ENST00000516437 110 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms