Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
HOXC9P31274 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
HOXC9P31274 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC9P31274 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC9P31274 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
HOXC9P31274 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC9P31274 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC9P31274 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXC9P31274 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXC9P31274 AC024341.1-201ENST00000526444 1552 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 CASC19-204ENST00000641001 2055 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 SNORA27.3-201ENST00000364937 134 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 RNA5SP171-201ENST00000391071 115 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 RPL7P58-201ENST00000402913 758 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 TPT1P2-201ENST00000413105 503 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXC9P31274 AC115285.1-201ENST00000424879 736 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 MRPS33P4-201ENST00000434892 317 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 ZNF736P1Y-201ENST00000440402 1276 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 MTND6P5-201ENST00000448266 512 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 ATP5G1P3-201ENST00000463301 410 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 OR4V1P-201ENST00000525394 1140 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXC9P31274 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
HOXC9P31274 GLRXP2-201ENST00000555594 321 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC9P31274 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXC9P31274 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
HOXC9P31274 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
HOXC9P31274 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXC9P31274 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 AC005261.6-201ENST00000623072 1387 ntBASIC5.64□□□□□ -1.51
HOXC9P31274 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXC9P31274 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.64□□□□□ -1.51
HOXC9P31274 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC9P31274 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC9P31274 OR11H4-201ENST00000315409 1082 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXC9P31274 Y_RNA.110-201ENST00000363220 99 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 RNU1-44P-201ENST00000384453 163 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 SNORD66.1-201ENST00000391230 76 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC9P31274 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXC9P31274 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC9P31274 AL078604.1-201ENST00000404609 466 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AP000357.1-201ENST00000409926 1165 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 TRIM60P17-201ENST00000415181 719 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 EIF4A1P1-201ENST00000420241 934 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 ARAFP2-201ENST00000440565 559 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AC090602.1-201ENST00000469695 252 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AC090013.1-201ENST00000485147 480 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AP002812.1-201ENST00000495378 474 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 NPM1P41-201ENST00000512920 831 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 MTND4LP31-201ENST00000514859 294 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 RNU6-467P-201ENST00000517027 110 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 RNU1-45P-201ENST00000517191 141 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 MTND1P36-201ENST00000522384 936 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXC9P31274 AC074029.2-201ENST00000551045 634 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXC9P31274 AC022655.2-201ENST00000577280 318 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 MIR4444-1-201ENST00000581696 74 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 MIR4444-2-201ENST00000584390 74 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 AC020978.9-201ENST00000624380 1141 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AC106730.3-201ENST00000624568 641 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 AC112200.1-201ENST00000625015 234 ntBASIC5.63□□□□□ -1.51
HOXC9P31274 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXC9P31274 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXC9P31274 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC9P31274 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXC9P31274 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXC9P31274 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HOXC9P31274 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXC9P31274 MAPK10-286ENST00000641208 8747 ntBASIC5.62□□□□□ -1.51
HOXC9P31274 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXC9P31274 RNF19BPX-201ENST00000426224 625 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms