Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A3P12111 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 SNORA60-201ENST00000362396 134 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 RPL5P18-201ENST00000406671 891 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.12□□□□□ -1.75
COL6A3P12111 AC009506.2-201ENST00000420635 840 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 AC138761.5-201ENST00000433967 325 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.12□□□□□ -1.75
COL6A3P12111 YWHAEP4-201ENST00000505390 198 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AC023141.12-201ENST00000512399 199 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AC009303.3-201ENST00000591103 736 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 VN1R78P-201ENST00000597393 564 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AC007786.3-201ENST00000615154 596 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
COL6A3P12111 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.12□□□□□ -1.75
COL6A3P12111 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL6A3P12111 RNU6-729P-201ENST00000384399 107 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 SNORA74C-2-201ENST00000411179 201 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AC062016.2-201ENST00000420950 676 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 FCF1P7-201ENST00000451185 558 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.12□□□□□ -1.75
COL6A3P12111 RPL23AP53-201ENST00000521854 457 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.12□□□□□ -1.75
COL6A3P12111 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 DDX18P5-201ENST00000534547 1306 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 LINC00561-201ENST00000565815 2738 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 BMS1P3-201ENST00000372011 932 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A3P12111 AC091167.4-201ENST00000605079 184 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 AL355488.2-201ENST00000609909 2850 ntBASIC4.12□□□□□ -1.75
COL6A3P12111 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A3P12111 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
COL6A3P12111 AL591135.1-201ENST00000401578 5914 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A3P12111 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A3P12111 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A3P12111 MTND2P15-201ENST00000418575 892 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 RSL24D1P3-201ENST00000449255 495 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 AC073387.1-201ENST00000453261 709 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 AC093166.2-201ENST00000455969 1017 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 RPL7P1-201ENST00000468161 747 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 AC114878.2-201ENST00000604863 1251 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A3P12111 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A3P12111 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A3P12111 AC083837.1-201ENST00000565297 2994 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A3P12111 RPL21P67-201ENST00000402896 478 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 Z74021.1-201ENST00000423610 407 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A3P12111 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A3P12111 AP002884.2-201ENST00000471647 395 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 RNA5SP303-201ENST00000516192 130 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A3P12111 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A3P12111 AC138932.5-201ENST00000617759 563 ntBASIC4.11□□□□□ -1.75
COL6A3P12111 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A3P12111 JPX-212ENST00000639185 9658 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A3P12111 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
COL6A3P12111 AL079342.1-201ENST00000401460 267 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AC003685.2-201ENST00000422795 395 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A3P12111 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
COL6A3P12111 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.1□□□□□ -1.75
COL6A3P12111 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 AC021876.1-201ENST00000425959 359 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 HIGD1AP3-201ENST00000515857 278 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AC113192.3-201ENST00000529152 742 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms