Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC007161.1-204ENST00000423039 460 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 ETF1P3-201ENST00000430422 1160 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 MTND4P25-201ENST00000441039 533 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 HMGB1P48-201ENST00000446155 598 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 RPS4XP20-201ENST00000505751 772 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 MAL2-205ENST00000521048 575 ntTSL 4 BASIC6.07□□□□□ -1.44
COL6A1P12109 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC024940.3-201ENST00000538551 316 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 VN1R83P-201ENST00000595685 445 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC092653.1-201ENST00000608509 531 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 AL121890.3-201ENST00000618494 516 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A1P12109 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A1P12109 AP000346.3-201ENST00000622821 210 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC099494.2-201ENST00000623371 978 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC109454.4-201ENST00000623411 649 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 FP325313.1-201ENST00000638228 703 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 MTND5P24-201ENST00000438892 1767 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A1P12109 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.07□□□□□ -1.44
COL6A1P12109 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A1P12109 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.06□□□□□ -1.44
COL6A1P12109 NLRP3P1-201ENST00000622303 1785 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL6A1P12109 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL6A1P12109 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
COL6A1P12109 RNU6-244P-201ENST00000391028 104 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 RPL23AP17-201ENST00000401064 499 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AL590084.2-201ENST00000401481 382 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AL078599.1-201ENST00000402075 293 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 OR4K12P-201ENST00000406538 961 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 RNGTTP1-201ENST00000420965 728 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC246680.2-201ENST00000422106 389 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A1P12109 C1DP1-201ENST00000426049 402 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 TRAPPC2P5-201ENST00000426293 308 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 DPY19L1P2-201ENST00000426647 915 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 RAC1P8-201ENST00000427086 527 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A1P12109 AC244035.1-201ENST00000430042 390 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A1P12109 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.06□□□□□ -1.44
COL6A1P12109 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.06□□□□□ -1.44
COL6A1P12109 AL354941.1-201ENST00000438600 464 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 MTCYBP34-201ENST00000439552 670 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A1P12109 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC6.06□□□□□ -1.44
COL6A1P12109 AL596266.1-201ENST00000448132 400 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A1P12109 AL109741.2-201ENST00000455561 343 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC009127.1-201ENST00000467090 155 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 RN7SL188P-201ENST00000469842 285 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 AC008897.1-201ENST00000494006 347 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC010424.1-201ENST00000506336 297 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC113347.3-201ENST00000509113 148 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 IGHVIII-38-1-201ENST00000521454 282 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A1P12109 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A1P12109 AL121766.1-201ENST00000547436 487 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A1P12109 AC068714.1-201ENST00000559623 800 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC209154.1-201ENST00000582156 337 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.06□□□□□ -1.44
COL6A1P12109 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC6.06□□□□□ -1.44
COL6A1P12109 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A1P12109 AC090246.1-201ENST00000616499 426 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC091905.4-201ENST00000623432 202 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.06□□□□□ -1.44
COL6A1P12109 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 NCLP2-201ENST00000416078 1462 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AC095050.2-201ENST00000510748 1458 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 AC092104.1-201ENST00000497346 1441 ntBASIC6.06□□□□□ -1.44
COL6A1P12109 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms