Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU4-25P-201ENST00000410569 230 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 RNA5SP498-201ENST00000411342 120 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 RPS20P14-201ENST00000412545 360 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC023141.6-201ENST00000429418 337 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 RPEP2-201ENST00000432149 701 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL691517.1-201ENST00000440833 1235 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 XKRY2-201ENST00000442362 1093 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL500527.1-201ENST00000448532 255 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 RPL7AP52-201ENST00000458096 790 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 RN7SL481P-201ENST00000477764 299 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 CYCSP28-201ENST00000534284 321 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 NOP56P3-201ENST00000549457 385 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC005242.1-201ENST00000585658 438 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC079587.1-201ENST00000603846 277 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL049844.2-201ENST00000604280 628 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL023583.1-201ENST00000607518 1143 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AL096803.3-201ENST00000609032 532 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 MIR378J-201ENST00000611988 109 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC140113.4-201ENST00000622087 222 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AC007546.2-201ENST00000623996 360 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 AP002967.1-201ENST00000624203 539 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 TCP1P3-201ENST00000414406 1498 ntBASIC4.47□□□□□ -1.69
LHX3Q9UBR4 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LHX3Q9UBR4 MFSD8-242ENST00000641690 4199 ntBASIC4.46□□□□□ -1.69
LHX3Q9UBR4 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.46□□□□□ -1.69
LHX3Q9UBR4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.46□□□□□ -1.69
LHX3Q9UBR4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
LHX3Q9UBR4 EOGT-210ENST00000615922 1931 ntBASIC4.46□□□□□ -1.69
LHX3Q9UBR4 AP001642.1-201ENST00000624727 2117 ntBASIC4.46□□□□□ -1.69
LHX3Q9UBR4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
LHX3Q9UBR4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.69
LHX3Q9UBR4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RNA5SP307-201ENST00000362863 116 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RNA5SP509-201ENST00000364577 119 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 SNORD51.1-201ENST00000365405 77 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RNU6-244P-201ENST00000391028 104 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 MTND4P24-201ENST00000424002 397 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 FAR1P1-201ENST00000427163 934 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RPL23AP25-201ENST00000430973 463 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 ZNF965P-201ENST00000432501 817 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 CBX1P1-201ENST00000440184 427 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 MTCO3P43-201ENST00000440974 771 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 PHBP16-201ENST00000446318 950 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 MTND2P25-201ENST00000449028 610 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC089999.1-201ENST00000460336 374 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC092905.1-201ENST00000467527 949 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC090013.1-201ENST00000485147 480 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RN7SL810P-201ENST00000493031 276 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 OR51K1P-201ENST00000510214 950 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 RNU6-513P-201ENST00000516104 104 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 HIGD1AP5-201ENST00000529959 259 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AL390726.5-202ENST00000564800 256 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 MIR4284-201ENST00000578924 81 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AC113403.1-201ENST00000604910 193 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 Z98200.1-201ENST00000607298 470 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 SNORD91B-202ENST00000608459 222 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AL391834.1-201ENST00000609609 560 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AL121890.3-201ENST00000618494 516 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 AP003497.2-201ENST00000624220 967 ntBASIC4.46□□□□□ -1.7
LHX3Q9UBR4 HPVC1-201ENST00000629899 1198 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms