Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 DYNLL1P6-201ENST00000503440 264 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 XKRY-201ENST00000510392 1100 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC117532.1-201ENST00000514638 323 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RNU6-759P-201ENST00000516740 103 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RN7SKP147-201ENST00000517154 244 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 NDUFAF4P1-201ENST00000559425 519 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 MIR4436B2-201ENST00000581415 91 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 MIR4436B1-201ENST00000583272 91 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC090616.2-202ENST00000584248 222 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC009237.13-201ENST00000603193 276 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC096553.1-201ENST00000605169 829 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC105129.3-201ENST00000605455 485 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL451086.1-201ENST00000605596 223 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL451074.6-201ENST00000608512 729 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL451049.1-201ENST00000608672 497 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC072039.2-201ENST00000608883 439 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AL136295.6-201ENST00000610486 658 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC023158.2-201ENST00000614876 543 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC121761.2-201ENST00000617300 689 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 uc_338.9-201ENST00000617424 182 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 uc_338.7-201ENST00000621834 124 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AC073869.7-201ENST00000640874 297 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 AP000526.1-201ENST00000603308 1388 ntBASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TDP1Q9NUW8 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC092747.4-201ENST00000620519 1861 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC092681.1-201ENST00000297369 291 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 RNU6-225P-201ENST00000384613 103 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AL590084.2-201ENST00000401481 382 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 RNA5SP80-201ENST00000410475 111 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC098592.1-201ENST00000419352 333 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 RPL7P44-201ENST00000424827 742 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 USP9YP22-201ENST00000438971 294 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 MTCYBP34-201ENST00000439552 670 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC073465.2-201ENST00000440938 498 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 RPL31P3-201ENST00000458430 332 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 RPL35AP28-201ENST00000459730 331 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 BZW1P2-201ENST00000473537 826 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 GAPDHP36-201ENST00000480688 918 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 OR2A20P-203ENST00000498397 1268 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AP001922.4-201ENST00000526967 290 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 OR8G3P-201ENST00000533406 921 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC079171.1-201ENST00000568788 914 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 BPTFP1-201ENST00000579209 492 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC009027.1-201ENST00000604510 479 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AL359757.1-201ENST00000623176 255 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms