Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC133552.1-201ENST00000569988 4007 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL034546.1-201ENST00000623740 3693 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC009120.2-204ENST00000621548 2032 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL136100.1-201ENST00000407696 330 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC211486.3-201ENST00000412694 621 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 RPS15AP40-201ENST00000419621 391 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 ELOCP4-201ENST00000420090 333 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 RPS10P14-201ENST00000440748 502 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 NOP56P2-201ENST00000447491 769 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC009244.1-201ENST00000450566 258 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 PMCHL2-203ENST00000457791 237 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 RPL7AP23-201ENST00000482625 776 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 RPL36AP51-201ENST00000487216 318 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 NIFKP7-201ENST00000503365 834 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 MTCO1P35-201ENST00000515270 228 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC093853.1-201ENST00000515689 483 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 CENPUP1-201ENST00000526649 1202 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 CBX3P5-201ENST00000552017 521 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AP005119.1-201ENST00000580956 292 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC060771.1-201ENST00000582031 164 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC011921.2-201ENST00000589465 152 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC068790.3-201ENST00000602988 553 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AL158211.4-201ENST00000606988 584 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 Six3os1_4.1-201ENST00000615706 324 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC012150.2-201ENST00000621300 544 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC073862.4-201ENST00000622982 854 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC006065.6-201ENST00000625201 545 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 FER-210ENST00000628534 558 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC099654.15-201ENST00000639802 509 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC020633.1-201ENST00000468439 2247 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 CR1-203ENST00000367051 7469 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.2□□□□□ -1.58
CCDC140Q96MF4 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC140Q96MF4 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms