Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.18□□□□□ -1.9
FOXA3P55318 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 MRPS35P3-201ENST00000603189 709 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 AP000864.1-201ENST00000609424 650 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC128687.2-201ENST00000609657 566 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC004241.3-201ENST00000611728 517 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 MIR486-1-201ENST00000612171 68 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC026124.2-201ENST00000621847 656 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC000123.2-201ENST00000623124 461 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 FP325313.1-201ENST00000638228 703 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
FOXA3P55318 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 AL136964.1-201ENST00000622038 2990 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
FOXA3P55318 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
FOXA3P55318 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
FOXA3P55318 RNA5SP123-201ENST00000363244 119 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 RNU6-171P-201ENST00000384354 107 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 RNA5SP332-201ENST00000391063 115 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 CHMP1B2P-201ENST00000399581 597 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AL138878.1-201ENST00000405131 347 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AL136131.1-201ENST00000406079 803 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 AC093162.1-201ENST00000419682 124 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AP001324.1-201ENST00000428553 399 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA3P55318 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA3P55318 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 ELOCP10-201ENST00000440624 327 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 EXTL2P1-201ENST00000446218 416 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 TRY2P-201ENST00000448860 689 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 SETP20-201ENST00000457046 852 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 RPL35AP15-201ENST00000468042 339 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 RN7SL30P-201ENST00000488416 306 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AC109462.1-201ENST00000491087 368 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 ATP1B1P1-201ENST00000509767 915 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 IGKV2D-23-201ENST00000518179 286 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AC013701.1-201ENST00000522657 465 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.17□□□□□ -1.9
FOXA3P55318 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXA3P55318 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 AC079587.1-201ENST00000603846 277 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AL133338.2-201ENST00000604292 736 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 ELOCP34-201ENST00000604436 327 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AC095038.2-201ENST00000621464 1070 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AL512356.3-201ENST00000623005 461 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AC091905.4-201ENST00000623432 202 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AP005264.7-201ENST00000625003 745 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
FOXA3P55318 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.17□□□□□ -1.9
FOXA3P55318 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXA3P55318 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
FOXA3P55318 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
FOXA3P55318 MTCO1P14-201ENST00000441695 1559 ntBASIC3.17□□□□□ -1.9
FOXA3P55318 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
FOXA3P55318 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA3P55318 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 GNAS-202ENST00000306090 477 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXA3P55318 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
FOXA3P55318 RAB5CP1-201ENST00000395972 580 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 RN7SKP273-201ENST00000411392 314 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 AMD1P2-201ENST00000412936 992 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXA3P55318 AC005154.2-201ENST00000438110 379 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 PPIAP17-201ENST00000438507 471 ntBASIC3.16□□□□□ -1.9
FOXA3P55318 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXA3P55318 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms