Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXC9P31274 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXC9P31274 AP005435.3-201ENST00000531260 3198 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXC9P31274 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXC9P31274 CEACAMP1-201ENST00000434624 1035 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AL590762.3-201ENST00000436372 640 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXC9P31274 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXC9P31274 CYCSP53-201ENST00000455540 265 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXC9P31274 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXC9P31274 AC108751.2-201ENST00000469993 231 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 RNA5SP360-201ENST00000516555 118 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXC9P31274 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXC9P31274 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
HOXC9P31274 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXC9P31274 MTND2P13-201ENST00000577438 1039 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 MIR4433B-201ENST00000581329 102 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 BNIP3P33-201ENST00000598912 569 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AL583832.1-201ENST00000603227 784 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AC084036.1-201ENST00000609190 508 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 AC006133.1-201ENST00000617106 264 ntBASIC5.67□□□□□ -1.5
HOXC9P31274 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXC9P31274 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXC9P31274 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXC9P31274 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXC9P31274 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
HOXC9P31274 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXC9P31274 AC087565.3-202ENST00000642085 1603 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 CYP1D1P-201ENST00000416662 1433 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXC9P31274 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXC9P31274 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXC9P31274 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
HOXC9P31274 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXC9P31274 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXC9P31274 MIR1911-201ENST00000410783 80 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 CYCSP19-201ENST00000411715 316 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.66□□□□□ -1.5
HOXC9P31274 RPL36AP10-201ENST00000421785 322 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 AL390879.2-203ENST00000426943 1121 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXC9P31274 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXC9P31274 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXC9P31274 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXC9P31274 PPM1AP1-201ENST00000502740 1135 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 SUMO2P4-201ENST00000504193 276 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 AC023632.4-201ENST00000517783 191 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 OR10D4P-201ENST00000525892 951 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 AC006064.5-201ENST00000541782 248 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXC9P31274 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXC9P31274 MIR3158-1-201ENST00000583596 81 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXC9P31274 AC010503.3-201ENST00000594355 540 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXC9P31274 LINC00216-201ENST00000623548 1126 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXC9P31274 AC017104.4-201ENST00000636283 1592 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
HOXC9P31274 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXC9P31274 AC068870.3-201ENST00000625077 2536 ntBASIC5.66□□□□□ -1.5
HOXC9P31274 AL133268.1-201ENST00000405676 1401 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AC000374.1-201ENST00000434698 1745 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXC9P31274 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
HOXC9P31274 CR382285.2-201ENST00000624662 1495 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXC9P31274 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HOXC9P31274 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXC9P31274 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXC9P31274 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXC9P31274 ATP5F1P3-201ENST00000397213 657 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 RN7SKP202-201ENST00000410439 330 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AC108032.1-201ENST00000416706 207 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 EIF1P3-201ENST00000423841 334 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 OR8F1P-201ENST00000425243 930 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXC9P31274 RPS29P7-201ENST00000439662 171 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 RRM2P4-201ENST00000441721 562 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXC9P31274 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXC9P31274 RN7SL132P-201ENST00000478131 296 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AF213884.1-201ENST00000488102 463 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 RN7SL604P-201ENST00000492589 296 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AC104164.2-201ENST00000496953 495 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXC9P31274 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXC9P31274 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXC9P31274 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXC9P31274 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
HOXC9P31274 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXC9P31274 AC005014.3-201ENST00000605985 190 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 AL356863.1-201ENST00000623378 1080 ntBASIC5.65□□□□□ -1.5
HOXC9P31274 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXC9P31274 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
HOXC9P31274 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXC9P31274 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms