Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SNORD39.2-201ENST00000579995 76 ntBASIC4.34□□□□□ -1.71
SHOX2O60902 CCDC58P3-201ENST00000590792 430 ntBASIC4.34□□□□□ -1.71
SHOX2O60902 EIF3FP1-201ENST00000613970 806 ntBASIC4.34□□□□□ -1.71
SHOX2O60902 AC244205.2-202ENST00000635781 342 ntBASIC4.34□□□□□ -1.71
SHOX2O60902 RPS4XP5-202ENST00000449995 1334 ntBASIC4.34□□□□□ -1.71
SHOX2O60902 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SHOX2O60902 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SHOX2O60902 NCAPGP1-201ENST00000505112 1814 ntBASIC4.34□□□□□ -1.71
SHOX2O60902 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SHOX2O60902 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.34□□□□□ -1.72
SHOX2O60902 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SHOX2O60902 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.34□□□□□ -1.72
SHOX2O60902 AC107027.3-201ENST00000565095 3473 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.33□□□□□ -1.72
SHOX2O60902 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.33□□□□□ -1.72
SHOX2O60902 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 AC131971.1-201ENST00000332881 1482 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 AC100871.1-201ENST00000507871 1456 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 HSPA8P17-201ENST00000427029 1382 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 RNU4-4P-201ENST00000364588 130 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SHOX2O60902 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SHOX2O60902 AL161631.1-201ENST00000417933 486 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC245028.1-201ENST00000423259 256 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC115285.1-201ENST00000424879 736 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.33□□□□□ -1.72
SHOX2O60902 AC087650.1-201ENST00000431445 468 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC112498.1-201ENST00000444401 332 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 AC104763.1-201ENST00000475274 360 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.33□□□□□ -1.72
SHOX2O60902 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.33□□□□□ -1.72
SHOX2O60902 AP000676.2-201ENST00000529711 301 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC022832.1-201ENST00000530718 645 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.33□□□□□ -1.72
SHOX2O60902 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.33□□□□□ -1.72
SHOX2O60902 AL352979.3-201ENST00000553515 247 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.33□□□□□ -1.72
SHOX2O60902 MIR4330-201ENST00000579077 105 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 MIR4644-201ENST00000579929 84 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC4.33□□□□□ -1.72
SHOX2O60902 BNIP3P11-201ENST00000603878 563 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AL121612.2-201ENST00000612261 482 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 AC100827.5-201ENST00000615883 426 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 AC016717.3-201ENST00000624730 554 ntBASIC4.33□□□□□ -1.72
SHOX2O60902 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.33□□□□□ -1.72
SHOX2O60902 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.33□□□□□ -1.72
SHOX2O60902 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SHOX2O60902 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SHOX2O60902 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
SHOX2O60902 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHOX2O60902 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.33□□□□□ -1.72
SHOX2O60902 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHOX2O60902 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.32□□□□□ -1.72
SHOX2O60902 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHOX2O60902 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SHOX2O60902 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SHOX2O60902 SDHCP2-201ENST00000398565 501 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 AC093162.1-201ENST00000419682 124 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.32□□□□□ -1.72
SHOX2O60902 AL049745.1-201ENST00000433953 286 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC009263.1-201ENST00000441193 1239 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.32□□□□□ -1.72
SHOX2O60902 EEF1B2P5-201ENST00000444820 548 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 RPL23AP43-201ENST00000446445 471 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 AC239367.2-201ENST00000447309 705 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC005532.2-201ENST00000467154 373 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.32□□□□□ -1.72
SHOX2O60902 BNIP3P41-201ENST00000503774 571 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 HPRT1P2-201ENST00000505250 544 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC013701.1-201ENST00000522657 465 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.32□□□□□ -1.72
SHOX2O60902 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.32□□□□□ -1.72
SHOX2O60902 AC027176.2-201ENST00000559166 746 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.32□□□□□ -1.72
SHOX2O60902 U7.8-201ENST00000619968 63 ntBASIC4.32□□□□□ -1.72
SHOX2O60902 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.32□□□□□ -1.72
SHOX2O60902 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHOX2O60902 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHOX2O60902 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SHOX2O60902 LINC00561-201ENST00000565815 2738 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AC093311.1-201ENST00000506586 2021 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 AC233968.1-201ENST00000611212 1300 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms