Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 SNORA73.1-201ENST00000363107 205 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 MTATP6P31-201ENST00000406985 692 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC006994.1-201ENST00000438212 839 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC006466.1-201ENST00000438721 289 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 RN7SL346P-201ENST00000491561 294 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL035404.1-201ENST00000497982 568 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC008562.1-201ENST00000521763 330 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC010306.1-201ENST00000523223 1117 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC009117.1-201ENST00000563948 554 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 NF1P5-201ENST00000588287 448 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 FAM25E-202ENST00000608562 189 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC100827.5-201ENST00000615883 426 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 AL049794.2-201ENST00000616301 365 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC093875.1-201ENST00000623688 504 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 SMG1P4-204ENST00000523028 4131 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS28Q9UK41 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 AC053481.2-202ENST00000582394 1500 ntBASIC5.06□□□□□ -1.6
VPS28Q9UK41 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS28Q9UK41 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC104118.1-201ENST00000607625 1589 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS28Q9UK41 RNU6-354P-201ENST00000383862 107 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 RNU6-610P-201ENST00000384264 107 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 RNU2-6P-201ENST00000411404 190 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC013429.2-201ENST00000418798 781 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AL358176.3-201ENST00000420757 454 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 RPL36AP10-201ENST00000421785 322 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 CDY14P-201ENST00000431260 1014 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC093414.1-201ENST00000434712 514 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 CDY12P-201ENST00000440679 1015 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 RPS7P5-201ENST00000441482 581 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 RPL7AP61-201ENST00000443410 636 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 CDY13P-201ENST00000445813 1015 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AL096829.2-201ENST00000446582 742 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS28Q9UK41 CDY23P-201ENST00000451661 1014 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC091685.2-201ENST00000454924 864 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC093166.2-201ENST00000455969 1017 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC104108.1-201ENST00000509930 412 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS28Q9UK41 RPL23AP53-201ENST00000521854 457 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AC068446.3-201ENST00000555285 382 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AL031320.1-201ENST00000604177 357 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS28Q9UK41 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS28Q9UK41 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 AL031119.1-201ENST00000404707 1879 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VPS28Q9UK41 MAPK10-304ENST00000641341 3984 ntBASIC5.05□□□□□ -1.6
VPS28Q9UK41 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 SAMMSON-226ENST00000642089 1582 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS28Q9UK41 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS28Q9UK41 GCNT6-201ENST00000379591 934 ntBASIC5.04□□□□□ -1.6
VPS28Q9UK41 SETP15-201ENST00000412724 337 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms