Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 GLULP6-201ENST00000399502 913 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 HMGB3P31-201ENST00000413333 595 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC114755.2-201ENST00000413520 361 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AF186996.5-201ENST00000418098 904 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 MORF4L1P7-201ENST00000426038 703 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 HMGB1P48-201ENST00000446155 598 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC068135.1-201ENST00000446164 246 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 MTND2P30-201ENST00000456663 382 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 RPS3AP41-201ENST00000462701 778 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 RPS20P21-201ENST00000466859 343 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC092324.1-201ENST00000468671 324 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 RN7SKP96-201ENST00000516948 297 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AL671309.1-201ENST00000603750 544 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 RNA5SP108-201ENST00000605921 117 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AP003117.2-201ENST00000606010 545 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC022079.2-201ENST00000619739 566 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AL445528.2-201ENST00000620582 470 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 U6.107-201ENST00000637108 79 ntBASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 AC119744.1-201ENST00000454746 1715 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 OR10J6P-201ENST00000289731 930 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 SNORA70.10-201ENST00000384515 134 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 SLC4A1APP1-201ENST00000419995 602 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 RPS26P40-201ENST00000435209 294 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 RHOT1P3-201ENST00000436571 331 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 MTCYBP21-201ENST00000443300 1113 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 MRPL35P2-201ENST00000448009 511 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC018635.1-201ENST00000468292 1030 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC010468.3-201ENST00000508225 458 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC021006.3-201ENST00000530771 192 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AF230666.2-201ENST00000602328 725 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC083899.3-201ENST00000603413 594 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 LLPHP1-201ENST00000603571 367 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC015804.1-201ENST00000622935 435 ntBASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
CHMP4AQ9BY43 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AL512646.1-201ENST00000269395 1077 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AL035419.1-201ENST00000397037 564 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 PRELID3BP11-201ENST00000414230 479 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AL590762.4-201ENST00000425885 253 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 snoU13.20-201ENST00000459180 104 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AC146507.1-201ENST00000468335 354 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AC012170.1-201ENST00000495139 359 ntBASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC6.35□□□□□ -1.39
CHMP4AQ9BY43 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms