Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL031584.1-201ENST00000447169 754 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL389915.2-201ENST00000454576 441 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC108751.2-201ENST00000469993 231 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 RN7SL727P-201ENST00000482164 296 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 NDUFA5P12-201ENST00000503796 343 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 HAUS1P1-201ENST00000505275 832 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC073358.1-201ENST00000505671 684 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 CYB5AP5-201ENST00000549779 389 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC022884.3-201ENST00000579571 248 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC008536.1-201ENST00000602872 669 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC005377.1-201ENST00000605126 456 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 IMMP1LP1-201ENST00000605170 488 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 OR2BH1P-201ENST00000608850 864 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL355816.2-201ENST00000610049 647 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL627230.1-201ENST00000613077 211 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 MIR7155-201ENST00000615925 56 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL591926.8-201ENST00000616876 211 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC013437.2-201ENST00000639587 677 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
NKX3-1Q99801 AC093311.1-201ENST00000506586 2021 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 ECM1P2-201ENST00000503354 1577 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 AL132640.2-201ENST00000559968 1698 ntBASIC4.22□□□□□ -1.73
NKX3-1Q99801 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.22□□□□□ -1.73
NKX3-1Q99801 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
NKX3-1Q99801 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.21□□□□□ -1.73
NKX3-1Q99801 DDX18P5-201ENST00000534547 1306 ntBASIC4.21□□□□□ -1.73
NKX3-1Q99801 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
NKX3-1Q99801 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.73
NKX3-1Q99801 MTCO1P18-201ENST00000455518 1419 ntBASIC4.21□□□□□ -1.73
NKX3-1Q99801 GTF2H2B-203ENST00000508065 1432 ntBASIC4.21□□□□□ -1.73
NKX3-1Q99801 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC093535.2-201ENST00000624769 2326 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 RNU6-543P-201ENST00000362576 108 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 SNORA17.1-201ENST00000362945 126 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 RNA5SP27-201ENST00000363839 119 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 SNORA66-201ENST00000384792 133 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 MIR765-201ENST00000390226 114 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL645927.1-201ENST00000396783 406 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL603865.2-201ENST00000401679 213 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL645733.1-201ENST00000402250 217 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 RN7SKP247-201ENST00000411094 308 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 TCEA1P4-201ENST00000415066 844 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AF186996.5-201ENST00000418098 904 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 MTCO2P23-201ENST00000425216 680 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC005033.1-201ENST00000428904 813 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 FABP5P3-201ENST00000437960 408 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC000041.1-201ENST00000439655 175 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC004854.1-201ENST00000440356 349 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL353093.1-201ENST00000441292 436 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC092647.3-201ENST00000443044 633 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 ARL5AP2-201ENST00000444698 533 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC000111.2-201ENST00000448200 210 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 RNU7-27P-201ENST00000459281 62 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC112206.1-201ENST00000468416 477 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms