Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC018552.3-201ENST00000567416 561 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC011477.5-201ENST00000586571 259 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AL078624.2-201ENST00000605063 554 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AL136363.1-201ENST00000605349 337 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AP003117.2-201ENST00000606010 545 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC019193.2-201ENST00000610012 634 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC006328.2-201ENST00000623198 397 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC012005.2-201ENST00000624333 397 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AC005858.3-201ENST00000624756 589 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 SELE-203ENST00000367775 3389 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 COG2-209ENST00000534989 2963 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CCDC140Q96MF4 AL359195.2-201ENST00000623657 4412 ntBASIC5.22□□□□□ -1.57
CCDC140Q96MF4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC140Q96MF4 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC140Q96MF4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC140Q96MF4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.21□□□□□ -1.57
CCDC140Q96MF4 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
CCDC140Q96MF4 MTND5P33-201ENST00000571250 1450 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 RNU6-1322P-201ENST00000364309 107 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 Y_RNA.234-201ENST00000364409 97 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC245036.1-201ENST00000391727 309 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 RN7SKP263-201ENST00000411194 309 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC016831.2-201ENST00000417179 352 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 SLC35E1P1-201ENST00000419313 864 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 REREP1Y-201ENST00000422655 198 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC000089.1-201ENST00000424559 801 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 REREP2Y-201ENST00000439103 200 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC127537.2-201ENST00000439258 465 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AL049734.2-201ENST00000441066 616 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 PMS2P9-201ENST00000441237 515 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC114495.1-201ENST00000441274 436 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC097463.1-201ENST00000447288 481 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 SLAMF6P1-201ENST00000451067 602 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 BX842559.2-201ENST00000451418 605 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC073476.1-201ENST00000452854 407 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 RAD23BP3-201ENST00000454157 1152 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC022364.2-201ENST00000457963 554 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC022034.3-201ENST00000471393 478 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 UBFD1P1-201ENST00000473259 814 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC097173.1-201ENST00000505862 819 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC096754.1-201ENST00000508904 818 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 B3GNTL1P1-201ENST00000509174 289 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC091849.1-201ENST00000509920 121 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 RNU6-1220P-201ENST00000517126 108 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 MIR5095-201ENST00000578844 88 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 RN7SL270P-201ENST00000579643 281 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AP001330.5-201ENST00000607176 411 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 Z95327.3-201ENST00000610385 572 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 TUG1_1.1-201ENST00000610654 145 ntBASIC5.21□□□□□ -1.58
CCDC140Q96MF4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC140Q96MF4 QRSL1P1-201ENST00000400977 1540 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms