Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXF1Q12946 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.83□□□□□ -1.8
FOXF1Q12946 MLECP1-201ENST00000615893 709 ntBASIC3.83□□□□□ -1.8
FOXF1Q12946 MIR3653-201ENST00000625572 110 ntBASIC3.83□□□□□ -1.8
FOXF1Q12946 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXF1Q12946 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXF1Q12946 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXF1Q12946 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXF1Q12946 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
FOXF1Q12946 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 NAMPTP1-201ENST00000440465 2514 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXF1Q12946 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 MIR93-201ENST00000385024 80 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 GSTM3P2-201ENST00000412746 530 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 RPL23AP38-201ENST00000423801 469 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 C4BPAP2-201ENST00000428434 478 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXF1Q12946 COX6B1P7-201ENST00000430845 235 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXF1Q12946 BTF3P10-201ENST00000433415 495 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 RPL23AP46-201ENST00000438548 490 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 SERPINA7P1-201ENST00000443077 631 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 RPS26P28-201ENST00000470806 348 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXF1Q12946 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL358913.1-201ENST00000554342 121 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AL121834.1-201ENST00000572284 509 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AC069366.1-201ENST00000583159 838 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 MIR3138-201ENST00000585238 82 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 AC011477.5-201ENST00000586571 259 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL139041.1-201ENST00000605480 610 ntBASIC3.82□□□□□ -1.8
FOXF1Q12946 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXF1Q12946 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
FOXF1Q12946 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXF1Q12946 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXF1Q12946 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXF1Q12946 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXF1Q12946 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
FOXF1Q12946 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXF1Q12946 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 LARP1BP1-201ENST00000506036 1359 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXF1Q12946 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 AL050305.1-201ENST00000399993 1230 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 CBX1P3-201ENST00000413296 527 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 GEMIN8P3-201ENST00000445417 720 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXF1Q12946 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXF1Q12946 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC105137.1-201ENST00000484355 562 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC091167.1-201ENST00000492017 396 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 PPBPP1-201ENST00000510807 373 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
FOXF1Q12946 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC138701.1-201ENST00000524329 714 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC022655.2-201ENST00000577280 318 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 MIR3939-201ENST00000582614 106 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXF1Q12946 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC005962.2-201ENST00000611427 652 ntBASIC3.81□□□□□ -1.8
FOXF1Q12946 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXF1Q12946 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
FOXF1Q12946 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXF1Q12946 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXF1Q12946 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
FOXF1Q12946 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXF1Q12946 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXF1Q12946 AC005261.4-201ENST00000600047 1385 ntBASIC3.8□□□□□ -1.8
FOXF1Q12946 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXF1Q12946 RNA5SP443-201ENST00000363083 132 ntBASIC3.8□□□□□ -1.8
FOXF1Q12946 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms