Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA3P55318 OR52J1P-201ENST00000450596 932 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 FABP3P2-201ENST00000453169 399 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA3P55318 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA3P55318 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC090568.1-201ENST00000509499 856 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 SNORD116-26-201ENST00000516006 96 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AP000827.1-201ENST00000527814 258 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC092851.1-201ENST00000535964 478 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC006064.5-201ENST00000541782 248 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 AL109766.1-201ENST00000555080 552 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC007599.1-201ENST00000568688 1174 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA3P55318 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA3P55318 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA3P55318 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA3P55318 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
FOXA3P55318 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA3P55318 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC010928.1-201ENST00000592477 1447 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA3P55318 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA3P55318 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 MFSD8-242ENST00000641690 4199 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 MAPK10-263ENST00000641052 4307 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC007685.1-201ENST00000329806 452 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 RNU4-4P-201ENST00000364588 130 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 OR13C3-201ENST00000374781 1108 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
FOXA3P55318 MIR659-201ENST00000384963 97 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 U3.25-201ENST00000391209 220 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 RN7SKP177-201ENST00000410567 355 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 SNRPFP1-201ENST00000414761 252 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 BX510359.2-201ENST00000417920 305 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 RPL7P53-201ENST00000421245 739 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 SLC9B1P4-201ENST00000421957 1288 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC3.18□□□□□ -1.9
FOXA3P55318 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXA3P55318 BTG3P1-201ENST00000435859 716 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 CNOT7P2-201ENST00000441051 832 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 OR1H1P-201ENST00000448731 937 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 RPL7P31-201ENST00000450192 724 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 PPIAP21-201ENST00000464473 501 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 RPL7P22-201ENST00000466005 733 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AP000926.1-201ENST00000479573 241 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 RNA5SP143-201ENST00000516936 115 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 IGKV2-38-201ENST00000517443 247 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 NARSP2-201ENST00000518524 679 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
FOXA3P55318 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
FOXA3P55318 TOMM20P2-201ENST00000540082 421 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC008033.2-201ENST00000542626 177 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 AC027176.2-201ENST00000559166 746 ntBASIC3.18□□□□□ -1.9
FOXA3P55318 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXA3P55318 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXA3P55318 AC015911.5-201ENST00000587076 451 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms