Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 AL732292.1-201ENST00000426692 226 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.99□□□□□ -1.77
FOXA1P55317 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 GSTA7P-201ENST00000438425 448 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 H2AFZP6-201ENST00000444403 394 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA1P55317 AC013356.1-201ENST00000489027 564 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA1P55317 AC092593.2-201ENST00000513866 913 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 RNU7-143P-201ENST00000516781 65 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC105233.3-201ENST00000531125 744 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA1P55317 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.99□□□□□ -1.77
FOXA1P55317 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.99□□□□□ -1.77
FOXA1P55317 SULT1C2P2-201ENST00000562517 294 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 AL161729.3-201ENST00000603533 673 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC114878.2-201ENST00000604863 1251 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC090246.1-201ENST00000616499 426 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC015722.2-201ENST00000622210 551 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AC006840.1-201ENST00000623069 542 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AP005264.7-201ENST00000625003 745 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 AC132825.8-201ENST00000640783 297 ntBASIC3.99□□□□□ -1.77
FOXA1P55317 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
FOXA1P55317 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
FOXA1P55317 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 Z82217.1-201ENST00000625157 8149 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA1P55317 AC018555.1-201ENST00000567548 1980 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC139713.2-214ENST00000642059 1811 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA1P55317 ELOCP19-201ENST00000411919 318 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 FAR2P2-201ENST00000413041 594 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA1P55317 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC006011.1-201ENST00000442758 349 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC135999.1-201ENST00000478962 479 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 AC041039.1-201ENST00000485656 536 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
FOXA1P55317 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
FOXA1P55317 KCTD9P2-201ENST00000512203 1013 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA1P55317 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC010809.3-201ENST00000621310 641 ntBASIC3.98□□□□□ -1.77
FOXA1P55317 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXA1P55317 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA1P55317 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXA1P55317 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA1P55317 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
FOXA1P55317 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
FOXA1P55317 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXA1P55317 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA1P55317 AC006971.1-201ENST00000407916 4486 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA1P55317 AL929601.4-201ENST00000613011 1341 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXA1P55317 RNA5SP513-201ENST00000364648 118 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 SNORA56-201ENST00000383966 129 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 RANP7-201ENST00000418085 644 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 AC092647.1-201ENST00000420654 287 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXA1P55317 AL358472.1-201ENST00000431295 329 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 CBX1P1-201ENST00000440184 427 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 AL591363.1-201ENST00000450091 483 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 RPL36AP13-201ENST00000457490 317 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 AC114982.2-201ENST00000461396 358 ntBASIC3.97□□□□□ -1.77
FOXA1P55317 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXA1P55317 AC017007.3-201ENST00000479865 435 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms