Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.52□□□□□ -1.69
COL4A4P53420 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.52□□□□□ -1.69
COL4A4P53420 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL4A4P53420 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL4A4P53420 AL450992.3-201ENST00000413192 568 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 AL512326.1-201ENST00000443050 721 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A4P53420 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.51□□□□□ -1.69
COL4A4P53420 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 IFITM8P-201ENST00000522529 394 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A4P53420 AC008966.2-201ENST00000606157 453 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 AL672167.1-203ENST00000641299 2975 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.51□□□□□ -1.69
COL4A4P53420 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.51□□□□□ -1.69
COL4A4P53420 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.51□□□□□ -1.69
COL4A4P53420 MIR491-201ENST00000384877 84 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 BOLA3P4-201ENST00000418151 400 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A4P53420 RPS4XP4-201ENST00000443195 763 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A4P53420 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.51□□□□□ -1.69
COL4A4P53420 AC110792.1-201ENST00000491826 472 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A4P53420 DUXAP2-201ENST00000519198 589 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A4P53420 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 OR51C1P-201ENST00000608504 942 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 AC010608.2-201ENST00000624830 470 ntBASIC4.51□□□□□ -1.69
COL4A4P53420 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
COL4A4P53420 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 EIF3EP2-201ENST00000423042 1814 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
COL4A4P53420 AL590704.1-201ENST00000402856 794 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 NDUFB4P4-201ENST00000404822 243 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 RN7SKP177-201ENST00000410567 355 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 MIR1911-201ENST00000410783 80 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 AC092647.1-201ENST00000420654 287 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A4P53420 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A4P53420 AC108022.1-201ENST00000493466 478 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 ARL4AP1-201ENST00000503220 705 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.5□□□□□ -1.69
COL4A4P53420 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.5□□□□□ -1.69
COL4A4P53420 AC011471.1-201ENST00000585766 187 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 AP003400.6-201ENST00000624698 740 ntBASIC4.5□□□□□ -1.69
COL4A4P53420 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL4A4P53420 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A4P53420 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
COL4A4P53420 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 DMD-228ENST00000541735 7080 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A4P53420 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A4P53420 AP001157.1-201ENST00000550837 2339 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 CASC19-261ENST00000641853 1638 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 RN7SKP156-201ENST00000410308 342 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 RN7SKP97-201ENST00000410966 333 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 SEPT7P8-201ENST00000413308 775 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.49□□□□□ -1.69
COL4A4P53420 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.49□□□□□ -1.69
COL4A4P53420 AC012497.1-201ENST00000429392 575 ntBASIC4.49□□□□□ -1.69
COL4A4P53420 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms