Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPL6P29-201ENST00000414863 865 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 RNF10P1-201ENST00000418589 369 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 MTND1P4-201ENST00000435196 415 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AL592437.1-201ENST00000443781 492 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC233982.1-201ENST00000451247 436 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 SRRM1P2-201ENST00000464531 1192 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.1□□□□□ -1.43
COL6A1P12109 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 HMGB1P44-201ENST00000508597 572 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 TOMM22P4-201ENST00000511318 336 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC004980.4-201ENST00000513375 203 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC078899.1-201ENST00000521432 1185 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.1□□□□□ -1.43
COL6A1P12109 RERGL-202ENST00000536890 367 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AGGF1P4-201ENST00000568249 801 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 AL121834.1-201ENST00000572284 509 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 AC078795.2-201ENST00000602835 1252 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC072039.2-201ENST00000608883 439 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC6.1□□□□□ -1.43
COL6A1P12109 AC018755.4-201ENST00000619715 454 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AC087385.3-201ENST00000620477 187 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 AL590240.3-201ENST00000621416 943 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 SGO1P2-201ENST00000429458 1589 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A1P12109 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC020656.2-201ENST00000613291 5309 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A1P12109 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A1P12109 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A1P12109 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
COL6A1P12109 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 RNU1-32P-201ENST00000363937 159 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 SNORD116.1-201ENST00000365628 92 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 AC211486.3-201ENST00000412694 621 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC105402.1-201ENST00000413336 545 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 ELOCP17-201ENST00000414751 326 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AL590609.2-201ENST00000421430 368 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A1P12109 CRIP1P1-201ENST00000427567 185 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 MTND1P32-201ENST00000433043 938 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 MTATP6P13-201ENST00000438531 667 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 TAF9P1-201ENST00000445421 515 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 AC007327.1-201ENST00000447461 264 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 RPL7L1P1-201ENST00000448259 785 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 OR51B8P-201ENST00000449892 769 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 VN1R32P-201ENST00000452234 905 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AC009963.2-201ENST00000453431 138 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 TAF9P2-201ENST00000454958 515 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 RN7SL481P-201ENST00000477764 299 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A1P12109 snoU109.5-201ENST00000516231 132 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 NRON-201ENST00000517270 370 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 RAB9BP1-201ENST00000519581 626 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC010198.2-201ENST00000550612 259 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms