Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Sdc1P18828 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Sdc1P18828 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Sdc1P18828 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Sdc1P18828 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.72□□□□□ -0.21
Sdc1P18828 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
Sdc1P18828 Asic1-205ENSMUST00000228185 1818 ntBASIC13.72□□□□□ -0.21
Sdc1P18828 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Sdc1P18828 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC13.72□□□□□ -0.21
Sdc1P18828 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Sdc1P18828 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Sdc1P18828 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Sdc1P18828 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
Sdc1P18828 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC13.71□□□□□ -0.21
Sdc1P18828 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC13.71□□□□□ -0.21
Sdc1P18828 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Sdc1P18828 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Sdc1P18828 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Sdc1P18828 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC13.71□□□□□ -0.21
Sdc1P18828 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Sdc1P18828 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Sdc1P18828 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Sdc1P18828 Gm43173-201ENSMUST00000202246 593 ntBASIC13.7□□□□□ -0.22
Sdc1P18828 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC13.7□□□□□ -0.22
Sdc1P18828 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC13.7□□□□□ -0.22
Sdc1P18828 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
Sdc1P18828 Ntrk2-205ENSMUST00000224402 2284 ntBASIC13.7□□□□□ -0.22
Sdc1P18828 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Sdc1P18828 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Sdc1P18828 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Sdc1P18828 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 AC115863.1-201ENSMUST00000214815 1813 ntBASIC13.69□□□□□ -0.22
Sdc1P18828 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Sdc1P18828 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms