Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CENPUP2-201ENST00000555897 1186 ntBASIC6.4□□□□□ -1.38
CHMP4AQ9BY43 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP4AQ9BY43 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC6.4□□□□□ -1.38
CHMP4AQ9BY43 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC6.4□□□□□ -1.38
CHMP4AQ9BY43 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CHMP4AQ9BY43 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.4□□□□□ -1.39
CHMP4AQ9BY43 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.4□□□□□ -1.39
CHMP4AQ9BY43 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CHMP4AQ9BY43 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 MTATP6P31-201ENST00000406985 692 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 MIR1303-201ENST00000408625 86 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 RPS12P5-201ENST00000423449 371 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC005189.1-201ENST00000431286 310 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC006466.1-201ENST00000438721 289 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 EIF2S2P2-201ENST00000447161 982 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 PPIAP3-201ENST00000450588 505 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 NDUFS5P3-201ENST00000450668 321 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 SBDSP1-204ENST00000453858 737 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 RN7SL517P-201ENST00000462240 305 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 RPS23P1-201ENST00000491662 432 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC110792.2-201ENST00000510278 224 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC116553.2-201ENST00000564203 463 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 EIF1P5-201ENST00000585002 234 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC005034.4-201ENST00000603612 899 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AL450270.1-201ENST00000606160 391 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AP000648.2-201ENST00000624182 404 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 EED-206ENST00000527888 1422 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AL356489.2-201ENST00000566968 3528 ntBASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP4AQ9BY43 AC099654.2-201ENST00000433031 1980 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 NOL8P1-201ENST00000508336 3529 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 SNORA73.1-201ENST00000363107 205 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 U3.15-201ENST00000365398 212 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 LRRC37BP1-201ENST00000398851 714 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC092745.2-202ENST00000411880 369 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AL139128.1-201ENST00000413921 941 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 RBMY2KP-201ENST00000418221 992 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 OR2AM1P-201ENST00000422137 422 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC023141.6-201ENST00000429418 337 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC112498.1-201ENST00000444401 332 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 RPL6P5-201ENST00000445678 828 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 OTX2P1-201ENST00000450956 354 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AL353718.1-201ENST00000451028 517 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 RPL23AP73-201ENST00000492507 471 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC113430.1-201ENST00000506872 718 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC138832.1-201ENST00000522871 556 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 PTP4A1P6-201ENST00000531034 478 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AP001180.3-201ENST00000582221 145 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 BX005214.3-202ENST00000619809 325 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 AC019206.1-201ENST00000621938 425 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 HPVC1-201ENST00000629899 1198 ntBASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.38□□□□□ -1.39
CHMP4AQ9BY43 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP4AQ9BY43 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms