Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.65□□□□□ -1.5
USP39Q53GS9 OR52B5P-201ENST00000435337 951 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC096775.1-201ENST00000437724 448 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.65□□□□□ -1.5
USP39Q53GS9 RN7SL222P-201ENST00000476452 299 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 RPL9P33-201ENST00000484311 566 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 RN7SL97P-201ENST00000486780 299 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC069304.1-201ENST00000491593 704 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC116353.2-201ENST00000505332 712 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AC109464.2-201ENST00000510242 943 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 Y_RNA.695-201ENST00000516715 107 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC136777.2-201ENST00000522979 358 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AP002963.1-201ENST00000530590 184 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AL121594.2-201ENST00000541658 472 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AL121766.1-201ENST00000547436 487 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 DUX4L52-201ENST00000549363 777 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 BLZF2P-201ENST00000553776 1130 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.65□□□□□ -1.5
USP39Q53GS9 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AL163952.1-202ENST00000569625 600 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.65□□□□□ -1.5
USP39Q53GS9 OR52B5P-202ENST00000641118 1110 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
USP39Q53GS9 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.65□□□□□ -1.51
USP39Q53GS9 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.65□□□□□ -1.51
USP39Q53GS9 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.65□□□□□ -1.51
USP39Q53GS9 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 AL022311.1-201ENST00000623726 19416 ntBASIC5.65□□□□□ -1.51
USP39Q53GS9 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 AL356317.1-201ENST00000396110 1436 ntBASIC5.65□□□□□ -1.51
USP39Q53GS9 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP39Q53GS9 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.65□□□□□ -1.51
USP39Q53GS9 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.64□□□□□ -1.51
USP39Q53GS9 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC005005.4-201ENST00000623789 16698 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 CR848007.1-201ENST00000442354 1699 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC103591.2-201ENST00000265259 766 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP39Q53GS9 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
USP39Q53GS9 RPL23P2-201ENST00000320371 421 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 MIR365B-201ENST00000362317 111 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 RN7SKP6-201ENST00000364795 319 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 RNU11-201ENST00000387069 134 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AL590084.2-201ENST00000401481 382 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 RPS6P23-201ENST00000413224 722 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 MTCO2P34-201ENST00000421994 607 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 C1DP1-201ENST00000426049 402 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 CRIP1P1-201ENST00000427567 185 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC5.64□□□□□ -1.51
USP39Q53GS9 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC005033.1-201ENST00000428904 813 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 MOB1AP1-201ENST00000430903 535 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 YWHAZP7-201ENST00000436906 631 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC006335.2-201ENST00000437993 330 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 RPS27P5-201ENST00000444247 244 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 MRPL35P2-201ENST00000448009 511 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC244505.3-201ENST00000454598 187 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC5.64□□□□□ -1.51
USP39Q53GS9 RPS18P6-201ENST00000476880 458 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC092045.1-201ENST00000495716 1231 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 PGBD4P4-201ENST00000509673 613 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 RNA5SP303-201ENST00000516192 130 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 C1GALT1P3-201ENST00000522049 819 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AKIRIN1P1-201ENST00000547384 544 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC008147.3-201ENST00000548666 354 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.64□□□□□ -1.51
USP39Q53GS9 AL360012.1-201ENST00000602813 131 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC079089.3-201ENST00000603094 673 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC087763.1-201ENST00000603391 286 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.64□□□□□ -1.51
USP39Q53GS9 OR2BH1P-201ENST00000608850 864 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC126915.2-201ENST00000610957 190 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 Mico1.1-201ENST00000611698 204 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.64□□□□□ -1.51
USP39Q53GS9 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms