Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC025031.4-201ENST00000621248 3271 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.86□□□□□ -1.79
CHD3Q12873 AL355852.1-201ENST00000454081 1771 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CHD3Q12873 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CHD3Q12873 ATP5F1P2-201ENST00000398143 760 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 SNORA79B-201ENST00000410557 148 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 RNA5SP146-201ENST00000410743 123 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC3.86□□□□□ -1.79
CHD3Q12873 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.86□□□□□ -1.79
CHD3Q12873 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CHD3Q12873 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC3.86□□□□□ -1.79
CHD3Q12873 NUTF2P3-201ENST00000448540 384 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AC090142.1-201ENST00000465776 462 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 RN7SL542P-201ENST00000467147 294 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 RNA5SP73-201ENST00000516744 108 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CHD3Q12873 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CHD3Q12873 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC3.86□□□□□ -1.79
CHD3Q12873 MIR4444-1-201ENST00000581696 74 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 MIR4444-2-201ENST00000584390 74 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC3.86□□□□□ -1.79
CHD3Q12873 AC022916.3-201ENST00000592961 742 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.86□□□□□ -1.79
CHD3Q12873 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.86□□□□□ -1.79
CHD3Q12873 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.86□□□□□ -1.79
CHD3Q12873 AC006840.1-201ENST00000623069 542 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 AC067931.1-201ENST00000624190 671 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CHD3Q12873 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.86□□□□□ -1.79
CHD3Q12873 DDX18P4-201ENST00000511690 1966 ntBASIC3.86□□□□□ -1.79
CHD3Q12873 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
CHD3Q12873 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CHD3Q12873 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHD3Q12873 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHD3Q12873 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 TRAV35-201ENST00000390462 330 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CHD3Q12873 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.85□□□□□ -1.79
CHD3Q12873 RN7SL691P-201ENST00000494487 301 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC023632.4-201ENST00000517783 191 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC007066.2-202ENST00000566531 914 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC073091.2-201ENST00000603205 907 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 AC005034.4-201ENST00000603612 899 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 AC112200.1-201ENST00000625015 234 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
CHD3Q12873 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.85□□□□□ -1.79
CHD3Q12873 ZNF137P-201ENST00000456718 1920 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 AC007390.2-201ENST00000606229 3803 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.85□□□□□ -1.79
CHD3Q12873 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CHD3Q12873 RN7SKP280-201ENST00000364196 304 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 RNA5SP151-201ENST00000365632 117 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHD3Q12873 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC004938.1-201ENST00000438468 308 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 PHBP16-201ENST00000446318 950 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 AC053481.1-201ENST00000467217 306 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.85□□□□□ -1.79
CHD3Q12873 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC008958.1-201ENST00000511047 682 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 ADAD1P2-201ENST00000588476 646 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.85□□□□□ -1.79
CHD3Q12873 DDX18P6-201ENST00000450119 1997 ntBASIC3.85□□□□□ -1.79
CHD3Q12873 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.84□□□□□ -1.79
CHD3Q12873 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 RNA5SP307-201ENST00000362863 116 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 NPM1P26-201ENST00000426339 738 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHD3Q12873 TBCAP1-201ENST00000436520 327 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 RRM2P4-201ENST00000441721 562 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC3.84□□□□□ -1.79
CHD3Q12873 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.84□□□□□ -1.79
CHD3Q12873 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.84□□□□□ -1.79
CHD3Q12873 AC105233.3-201ENST00000531125 744 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.84□□□□□ -1.79
CHD3Q12873 BPIFA4P-203ENST00000603168 689 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 AC091979.2-201ENST00000607514 214 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 AL353726.1-201ENST00000614041 1000 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 AL356863.1-201ENST00000623378 1080 ntBASIC3.84□□□□□ -1.79
CHD3Q12873 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms