Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
VCPP55072 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
VCPP55072 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
VCPP55072 AP000756.2-201ENST00000624168 2567 ntBASIC5□□□□□ -1.61
VCPP55072 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.99□□□□□ -1.61
VCPP55072 AL121657.1-201ENST00000327215 531 ntBASIC4.99□□□□□ -1.61
VCPP55072 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
VCPP55072 MIR208A-201ENST00000362287 71 ntBASIC4.99□□□□□ -1.61
VCPP55072 RN7SKP280-201ENST00000364196 304 ntBASIC4.99□□□□□ -1.61
VCPP55072 NCSTNP1-201ENST00000406229 144 ntBASIC4.99□□□□□ -1.61
VCPP55072 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 AL451139.1-201ENST00000434718 346 ntBASIC4.99□□□□□ -1.61
VCPP55072 CASP3P1-201ENST00000446037 609 ntBASIC4.99□□□□□ -1.61
VCPP55072 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.99□□□□□ -1.61
VCPP55072 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.99□□□□□ -1.61
VCPP55072 MTND3P6-201ENST00000485242 339 ntBASIC4.99□□□□□ -1.61
VCPP55072 UBA52P3-201ENST00000491303 382 ntBASIC4.99□□□□□ -1.61
VCPP55072 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 SCARNA22-201ENST00000503991 125 ntBASIC4.99□□□□□ -1.61
VCPP55072 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 RNA5SP143-201ENST00000516936 115 ntBASIC4.99□□□□□ -1.61
VCPP55072 MIR2116-201ENST00000517221 80 ntBASIC4.99□□□□□ -1.61
VCPP55072 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.99□□□□□ -1.61
VCPP55072 MIR3158-1-201ENST00000583596 81 ntBASIC4.99□□□□□ -1.61
VCPP55072 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.99□□□□□ -1.61
VCPP55072 AC090948.2-201ENST00000607363 564 ntBASIC4.99□□□□□ -1.61
VCPP55072 AC097505.1-201ENST00000610199 565 ntBASIC4.99□□□□□ -1.61
VCPP55072 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.99□□□□□ -1.61
VCPP55072 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
VCPP55072 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
VCPP55072 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.99□□□□□ -1.61
VCPP55072 AC022893.2-201ENST00000564832 3296 ntBASIC4.99□□□□□ -1.61
VCPP55072 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.99□□□□□ -1.61
VCPP55072 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.99□□□□□ -1.61
VCPP55072 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VCPP55072 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.98□□□□□ -1.61
VCPP55072 AL672167.1-205ENST00000641112 3080 ntBASIC4.98□□□□□ -1.61
VCPP55072 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.98□□□□□ -1.61
VCPP55072 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.98□□□□□ -1.61
VCPP55072 OR56B2P-202ENST00000641377 2453 ntBASIC4.98□□□□□ -1.61
VCPP55072 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VCPP55072 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.98□□□□□ -1.61
VCPP55072 ARL4AP5-201ENST00000404372 599 ntBASIC4.98□□□□□ -1.61
VCPP55072 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.98□□□□□ -1.61
VCPP55072 EIF4A1P3-201ENST00000411521 244 ntBASIC4.98□□□□□ -1.61
VCPP55072 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.98□□□□□ -1.61
VCPP55072 RPS20P25-201ENST00000412447 352 ntBASIC4.98□□□□□ -1.61
VCPP55072 AC093084.1-201ENST00000424233 687 ntBASIC4.98□□□□□ -1.61
VCPP55072 RPS12P10-201ENST00000427031 377 ntBASIC4.98□□□□□ -1.61
VCPP55072 FHP1-201ENST00000442741 703 ntBASIC4.98□□□□□ -1.61
VCPP55072 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.98□□□□□ -1.61
VCPP55072 ARL4AP1-201ENST00000503220 705 ntBASIC4.98□□□□□ -1.61
VCPP55072 AC091868.1-201ENST00000508746 304 ntBASIC4.98□□□□□ -1.61
VCPP55072 HMGB1P19-201ENST00000517578 577 ntBASIC4.98□□□□□ -1.61
VCPP55072 AC023632.4-201ENST00000517783 191 ntBASIC4.98□□□□□ -1.61
VCPP55072 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
VCPP55072 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VCPP55072 AC022726.1-201ENST00000587475 207 ntBASIC4.98□□□□□ -1.61
VCPP55072 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.98□□□□□ -1.61
VCPP55072 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 OR10AB1P-202ENST00000641219 1686 ntBASIC4.98□□□□□ -1.61
VCPP55072 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VCPP55072 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VCPP55072 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VCPP55072 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.97□□□□□ -1.61
VCPP55072 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.97□□□□□ -1.61
VCPP55072 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VCPP55072 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.97□□□□□ -1.61
VCPP55072 AL445487.1-201ENST00000415694 1580 ntBASIC4.97□□□□□ -1.61
VCPP55072 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VCPP55072 RNU1-82P-201ENST00000390851 165 ntBASIC4.97□□□□□ -1.61
VCPP55072 RNA5SP397-201ENST00000391323 118 ntBASIC4.97□□□□□ -1.61
VCPP55072 RN7SKP199-201ENST00000410325 305 ntBASIC4.97□□□□□ -1.61
VCPP55072 AC114755.2-201ENST00000413520 361 ntBASIC4.97□□□□□ -1.61
VCPP55072 UQCRBP1-201ENST00000421129 336 ntBASIC4.97□□□□□ -1.61
VCPP55072 RPS17P8-201ENST00000434525 335 ntBASIC4.97□□□□□ -1.61
VCPP55072 RPS26P2-201ENST00000440331 348 ntBASIC4.97□□□□□ -1.61
VCPP55072 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC4.97□□□□□ -1.61
VCPP55072 AC099063.2-201ENST00000446360 662 ntBASIC4.97□□□□□ -1.61
VCPP55072 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.97□□□□□ -1.61
VCPP55072 AL358232.1-201ENST00000448030 501 ntBASIC4.97□□□□□ -1.61
VCPP55072 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms