Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DMBP28068 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 OR1AB1P-201ENST00000585564 761 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AF230666.2-201ENST00000602328 725 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 AL139286.1-201ENST00000604465 483 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 Z98200.1-201ENST00000607298 470 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC078899.5-201ENST00000612475 178 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 MIR7154-201ENST00000620673 73 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 AC006065.6-201ENST00000625201 545 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DMBP28068 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DMBP28068 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DMBP28068 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HLA-DMBP28068 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HLA-DMBP28068 KARSP3-201ENST00000571212 1504 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 USP9YP4-201ENST00000424401 1745 ntBASIC3.39□□□□□ -1.87
HLA-DMBP28068 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 MAPK10-304ENST00000641341 3984 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 RNA5SP513-201ENST00000364648 118 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 MIR141-201ENST00000384975 95 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 RPS3AP23-201ENST00000401762 784 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 OR1F12-201ENST00000402365 945 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 RPS20P14-201ENST00000412545 360 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 SNRPFP1-201ENST00000414761 252 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 RAC1P3-201ENST00000416129 580 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AL359265.2-201ENST00000434367 631 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 MAPRE1P3-201ENST00000435438 796 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 ARL2BPP10-201ENST00000446487 531 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC104306.1-201ENST00000449702 371 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC012671.1-201ENST00000451912 203 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 snoU13.1-201ENST00000459157 104 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AP002371.1-201ENST00000463604 433 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 CEACAMP10-202ENST00000495431 496 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC111000.3-201ENST00000508057 576 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 RN7SKP92-201ENST00000517266 244 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC090151.1-201ENST00000520784 730 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC090819.1-201ENST00000523800 1111 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC069240.1-201ENST00000548774 375 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AL133338.2-201ENST00000604292 736 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC023813.4-201ENST00000607580 580 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC019193.2-201ENST00000610012 634 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 MIR7703-201ENST00000620784 77 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 MIR7641-1-201ENST00000627518 61 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HLA-DMBP28068 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HLA-DMBP28068 CPHL1P-201ENST00000461341 3407 ntBASIC3.38□□□□□ -1.87
HLA-DMBP28068 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HLA-DMBP28068 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 RNA5SP22-201ENST00000365393 109 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HLA-DMBP28068 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 RNA5SP332-201ENST00000391063 115 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 VN1R8P-201ENST00000407739 893 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AP001324.1-201ENST00000428553 399 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 AL035551.1-201ENST00000446931 348 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC022431.1-201ENST00000450941 438 ntBASIC3.37□□□□□ -1.87
HLA-DMBP28068 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC3.37□□□□□ -1.87
HLA-DMBP28068 DDX39BP2-208ENST00000453923 258 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms