Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL606490.9-201ENST00000603331 271 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 MIR432-201ENST00000606207 94 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 AC007342.8-201ENST00000623278 678 ntBASIC5.17□□□□□ -1.58
COL5A3P25940 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
COL5A3P25940 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A3P25940 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL5A3P25940 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.17□□□□□ -1.58
COL5A3P25940 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A3P25940 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL5A3P25940 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.16□□□□□ -1.58
COL5A3P25940 RN7SKP186-201ENST00000365371 303 ntBASIC5.16□□□□□ -1.58
COL5A3P25940 MIR7-3-201ENST00000384898 110 ntBASIC5.16□□□□□ -1.58
COL5A3P25940 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A3P25940 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.16□□□□□ -1.58
COL5A3P25940 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A3P25940 AC008155.2-201ENST00000464337 397 ntBASIC5.16□□□□□ -1.58
COL5A3P25940 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A3P25940 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.16□□□□□ -1.58
COL5A3P25940 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.16□□□□□ -1.58
COL5A3P25940 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A3P25940 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A3P25940 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A3P25940 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.16□□□□□ -1.58
COL5A3P25940 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A3P25940 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A3P25940 AL133268.1-201ENST00000405676 1401 ntBASIC5.16□□□□□ -1.58
COL5A3P25940 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL5A3P25940 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL5A3P25940 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.16□□□□□ -1.58
COL5A3P25940 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.15□□□□□ -1.58
COL5A3P25940 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A3P25940 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A3P25940 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A3P25940 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL5A3P25940 SNORA60-201ENST00000362396 134 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A3P25940 KRR1P1-201ENST00000419430 803 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A3P25940 OR9M1P-201ENST00000459641 921 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 AL591473.1-201ENST00000464297 313 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 RNA5SP179-201ENST00000517284 121 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A3P25940 AC087369.1-201ENST00000520775 996 ntBASIC5.15□□□□□ -1.58
COL5A3P25940 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A3P25940 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.15□□□□□ -1.58
COL5A3P25940 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.15□□□□□ -1.58
COL5A3P25940 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.15□□□□□ -1.58
COL5A3P25940 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A3P25940 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC5.15□□□□□ -1.58
COL5A3P25940 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A3P25940 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL5A3P25940 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A3P25940 NCOA4P2-201ENST00000340589 1813 ntBASIC5.15□□□□□ -1.59
COL5A3P25940 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A3P25940 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.15□□□□□ -1.59
COL5A3P25940 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A3P25940 AC000374.1-201ENST00000434698 1745 ntBASIC5.15□□□□□ -1.59
COL5A3P25940 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A3P25940 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.15□□□□□ -1.59
COL5A3P25940 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A3P25940 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
COL5A3P25940 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL5A3P25940 U1.1-201ENST00000384101 164 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.14□□□□□ -1.59
COL5A3P25940 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.14□□□□□ -1.59
COL5A3P25940 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.14□□□□□ -1.59
COL5A3P25940 RAD23BP3-201ENST00000454157 1152 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 RN7SL323P-201ENST00000494712 295 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A3P25940 SOD1P3-201ENST00000518682 454 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 MIR4298-201ENST00000584380 73 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 QTRT1P1-201ENST00000604344 1078 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 AC015922.4-201ENST00000612568 690 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 AC091953.5-201ENST00000622919 233 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 AF001550.2-201ENST00000636643 217 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A3P25940 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL5A3P25940 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A3P25940 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A3P25940 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A3P25940 MIR183-201ENST00000384958 110 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 RPL21P17-201ENST00000397467 475 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 AL445433.1-201ENST00000457507 257 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A3P25940 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.14□□□□□ -1.59
COL5A3P25940 CYCSP28-201ENST00000534284 321 ntBASIC5.14□□□□□ -1.59
COL5A3P25940 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A3P25940 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.14□□□□□ -1.59
COL5A3P25940 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A3P25940 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A3P25940 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A3P25940 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A3P25940 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms