Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SGO1P2-201ENST00000429458 1589 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC211486.3-201ENST00000412694 621 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 PAICSP7-201ENST00000419829 962 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC007435.1-201ENST00000421086 415 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 GTF2IP23-201ENST00000423746 351 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL593851.1-201ENST00000426171 157 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC234781.2-201ENST00000426370 994 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL009174.1-201ENST00000426577 416 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 THAP5P1-201ENST00000439089 262 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC009127.1-201ENST00000467090 155 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC108734.3-201ENST00000481241 1165 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AL035404.1-201ENST00000497982 568 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC091435.1-201ENST00000505442 584 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC116353.3-201ENST00000511215 249 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC108471.1-201ENST00000513977 287 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AP000619.3-201ENST00000535634 1127 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AP002373.2-201ENST00000541631 1060 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 ELOCP32-201ENST00000548625 324 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 RN7SL356P-201ENST00000582228 248 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC022069.1-201ENST00000582910 658 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AP000769.2-201ENST00000602344 396 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 Mico1.1-201ENST00000611698 204 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC099494.2-201ENST00000623371 978 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 AF001550.2-201ENST00000636643 217 ntBASIC5.54□□□□□ -1.52
TDP1Q9NUW8 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.54□□□□□ -1.52
TDP1Q9NUW8 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 DDX18P4-201ENST00000511690 1966 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 SNORD56.6-201ENST00000384569 71 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 DBIP1-201ENST00000401435 260 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 RNU6-757P-201ENST00000410334 100 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 SEPT2P1-201ENST00000419651 180 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AL590399.2-201ENST00000427536 309 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 YWHAZP7-201ENST00000436906 631 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 UBE2D3P4-201ENST00000441973 436 ntBASIC5.53□□□□□ -1.52
TDP1Q9NUW8 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC5.53□□□□□ -1.52
TDP1Q9NUW8 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms