Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MIR138-2-201ENST00000384916 84 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL663061.1-201ENST00000416625 580 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RPS15AP12-201ENST00000419498 388 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC006548.1-201ENST00000427470 102 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 USP24P1-201ENST00000433802 779 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL356276.2-201ENST00000435919 558 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AMYP1-201ENST00000440059 1023 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MTND1P11-201ENST00000456661 876 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL133480.2-201ENST00000456723 487 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RPL23AP64-201ENST00000469465 435 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC026254.2-201ENST00000475295 371 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC107934.1-201ENST00000522215 217 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ACER3-213ENST00000533873 929 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RAB11AP2-201ENST00000545905 639 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC089984.3-201ENST00000552838 363 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC124068.1-201ENST00000563131 678 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL356432.3-201ENST00000568952 465 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MIR378C-201ENST00000578683 81 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL162413.1-201ENST00000603198 110 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC008782.1-201ENST00000603386 430 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 C8orf59P2-201ENST00000603441 271 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL355472.4-201ENST00000610233 626 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC079395.2-201ENST00000610982 737 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MIR6883-201ENST00000614952 78 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 CR381572.1-201ENST00000625098 102 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RACK1-235ENST00000626067 564 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 AL031119.1-201ENST00000404707 1879 ntBASIC5.24□□□□□ -1.57
CCDC140Q96MF4 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC140Q96MF4 ZNF652P1-201ENST00000442420 1309 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 SNORD56.2-201ENST00000363242 71 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RNA5SP474-201ENST00000391234 90 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC068050.1-201ENST00000394891 380 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 LDHAP5-201ENST00000394996 622 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL049693.1-201ENST00000402760 611 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RPL7P58-201ENST00000402913 758 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 MRPL32P1-201ENST00000406301 247 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL356776.1-201ENST00000406574 447 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RN7SKP91-201ENST00000410852 288 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 RNU2-41P-201ENST00000410991 178 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC009302.1-201ENST00000417147 390 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 EIF4A1P2-201ENST00000422633 1220 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC140Q96MF4 OR51AB1P-201ENST00000429046 620 ntBASIC5.23□□□□□ -1.57
CCDC140Q96MF4 BNIP3P2-201ENST00000441221 577 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms