Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 RNU6-317P-201ENST00000384031 107 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 CEACAMP8-201ENST00000413902 580 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AL512504.1-201ENST00000415494 778 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC244453.4-201ENST00000419150 388 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 MTCO1P52-201ENST00000433928 531 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 TPMTP4-201ENST00000450749 678 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 snoU13.20-201ENST00000459180 104 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 RPL23AP65-201ENST00000475608 468 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 RPL7AP6-201ENST00000477943 801 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 DEFB109F-201ENST00000491870 277 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC108022.1-201ENST00000493466 478 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 OR5M14P-201ENST00000506803 618 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC022790.1-201ENST00000522872 204 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC004232.3-201ENST00000622977 525 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AP000843.1-201ENST00000624880 701 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AL355852.1-201ENST00000454081 1771 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS39Q96JC1 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
VPS39Q96JC1 AP001002.1-201ENST00000625148 1513 ntBASIC4.67□□□□□ -1.66
VPS39Q96JC1 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 RNF6P1-201ENST00000444889 1784 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 HSPD1P14-201ENST00000432666 1618 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 AL591848.1-201ENST00000413092 322 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 RPL21P43-201ENST00000425440 472 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 AL160175.1-201ENST00000428124 247 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 OR2B7P-201ENST00000429302 934 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 RBMY2QP-201ENST00000429799 1147 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 MTCO1P57-201ENST00000432182 261 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 H2AFZP5-201ENST00000446960 382 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 BTF3P13-201ENST00000513224 490 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 CYCSP28-201ENST00000534284 321 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 ATP5J2P6-201ENST00000565203 266 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 MIR4458-201ENST00000578872 75 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 NF1P5-201ENST00000588287 448 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 AC093765.1-201ENST00000603758 881 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 AC068870.2-201ENST00000620635 389 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS39Q96JC1 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 OR51H2P-202ENST00000641424 3046 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 AL139811.1-201ENST00000424779 2299 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 MTCO1P8-201ENST00000416914 1523 ntBASIC4.66□□□□□ -1.66
VPS39Q96JC1 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS39Q96JC1 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.66
VPS39Q96JC1 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS39Q96JC1 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS39Q96JC1 INTS6P1-201ENST00000504674 2530 ntBASIC4.65□□□□□ -1.66
VPS39Q96JC1 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS39Q96JC1 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS39Q96JC1 RN7SKP104-201ENST00000362605 328 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 RNA5SP123-201ENST00000363244 119 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 SNORA74A-201ENST00000364089 198 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 SNORA62.2-201ENST00000364672 152 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 RNU4-31P-201ENST00000384211 141 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 MIR195-201ENST00000385194 87 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 Z98745.1-201ENST00000402553 494 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 RN7SKP199-201ENST00000410325 305 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 ARL4AP3-201ENST00000441452 574 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 OR1H1P-201ENST00000448731 937 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms