Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR550A3-201ENST00000390735 95 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 DUTP5-201ENST00000406790 469 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AL139128.1-201ENST00000413921 941 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC009237.10-201ENST00000414112 510 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 ATG4AP1-201ENST00000416893 538 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 RPL31P45-201ENST00000419532 356 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC093162.1-201ENST00000419682 124 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 RFESDP1-201ENST00000422350 461 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 YWHAZP2-201ENST00000440317 728 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC133473.1-201ENST00000455173 299 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 Z92846.1-201ENST00000456203 268 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 RPS17P2-201ENST00000461663 408 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 DEFB109F-201ENST00000491870 277 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 RPS4XP18-201ENST00000495480 763 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC025459.1-201ENST00000504072 156 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 NDUFB5P1-201ENST00000508134 564 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 GSTP1P1-201ENST00000548078 319 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 RPL21P7-201ENST00000557463 483 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC079075.1-201ENST00000559543 878 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC087477.6-201ENST00000559595 843 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC245128.3-201ENST00000594721 748 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AP003117.1-201ENST00000602771 554 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 SUMO2P14-201ENST00000604488 293 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC025175.1-201ENST00000606482 759 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AC099494.2-201ENST00000623371 978 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 AL049737.1-201ENST00000413920 1403 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 MTCO1P14-201ENST00000441695 1559 ntBASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 ZNF33CP-201ENST00000432492 2030 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 OR51C1P-202ENST00000641159 1444 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 XIAPP3-201ENST00000312918 795 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RNA5SP502-201ENST00000362694 119 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 SNORA66-201ENST00000384792 133 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 MIR195-201ENST00000385194 87 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RPL23AP48-201ENST00000406913 488 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RPL7P57-201ENST00000423238 740 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 DYNLL1P7-201ENST00000429273 258 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC105402.2-201ENST00000438503 358 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RPL12P3-201ENST00000440080 396 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RN7SL517P-201ENST00000462240 305 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AP000926.1-201ENST00000479573 241 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AL161747.1-201ENST00000480068 358 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC093270.2-201ENST00000486157 792 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC008953.1-201ENST00000497334 318 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 MTATP6P22-201ENST00000507369 598 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC018797.3-201ENST00000513388 1241 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 OR4A46P-201ENST00000527255 933 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 EDDM3DP-201ENST00000554692 434 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 RPL10P14-201ENST00000565265 298 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 MIR3691-201ENST00000578066 90 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AL049539.1-201ENST00000611964 459 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AC005086.4-201ENST00000623065 213 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 AL049536.1-201ENST00000625043 744 ntBASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
ZNF540Q8NDQ6 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 GLULP6-201ENST00000399502 913 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 RN7SKP177-201ENST00000410567 355 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CEACAMP8-201ENST00000413902 580 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 303.6 ms