Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RN7SL356P-201ENST00000582228 248 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 PRPF19P1-201ENST00000584766 898 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 OR7A19P-201ENST00000608051 733 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AL355816.2-201ENST00000610049 647 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AC124016.2-201ENST00000610058 665 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 BNIP3P41-202ENST00000616656 861 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AC009318.3-201ENST00000616916 503 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AC084824.4-201ENST00000620106 731 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AC007275.1-201ENST00000621243 671 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AL390318.1-201ENST00000624564 687 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AP003400.3-201ENST00000624904 346 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AL118496.1-201ENST00000440201 1812 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 MFSD8-213ENST00000641134 1327 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AL049555.1-201ENST00000562834 1933 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 AL034370.1-201ENST00000397254 1590 ntBASIC4.36□□□□□ -1.71
PDLIM3Q53GG5 HSPD1P14-201ENST00000432666 1618 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 ADAM5-202ENST00000399789 1942 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC01355-201ENST00000566551 5444 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 OR9G4-201ENST00000302957 984 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SNORA70.2-201ENST00000364506 135 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SNORA72.3-201ENST00000365074 132 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 RNU6-468P-201ENST00000384003 109 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 RNU6-185P-201ENST00000384421 107 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 GAPDHP42-201ENST00000406848 981 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 USP9YP9-201ENST00000429406 715 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC245028.2-201ENST00000458673 253 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 HMGB1P38-201ENST00000490557 577 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC090638.1-201ENST00000498296 909 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC069306.1-201ENST00000507006 843 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SNORA19.3-201ENST00000516165 130 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 C1GALT1P3-201ENST00000522049 819 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LSM3P2-201ENST00000551246 273 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC084757.1-201ENST00000559987 490 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 HMGB3P26-201ENST00000560051 582 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 HNRNPCP4-201ENST00000571636 900 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 MIR4789-201ENST00000577469 82 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC096947.1-201ENST00000603233 470 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC008745.1-201ENST00000604064 271 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 TAS2R6P-201ENST00000605022 826 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC027449.1-201ENST00000608890 407 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC011472.4-201ENST00000615848 491 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AC096656.1-201ENST00000623826 1364 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 AL592437.2-201ENST00000421655 2434 ntBASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
PDLIM3Q53GG5 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms