Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 AC020978.9-201ENST00000624380 1141 ntBASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC88AQ3V6T2 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 SNORA73.2-201ENST00000364946 201 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 RN7SKP156-201ENST00000410308 342 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 CRYBB2P1-203ENST00000415709 538 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AL157884.3-201ENST00000448273 1184 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 ATP5G1P3-201ENST00000463301 410 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 USP9YP2-201ENST00000504503 1000 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC006499.5-201ENST00000505037 514 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 USP9YP1-201ENST00000513521 1002 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 MIR5685-201ENST00000579080 79 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AF131215.7-201ENST00000602443 707 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC007342.8-201ENST00000623278 678 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AL603750.1-201ENST00000624216 1717 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 OR56B2P-201ENST00000317102 954 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AL445363.3-201ENST00000623080 671 ntBASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC88AQ3V6T2 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 ENSAP1-201ENST00000392855 326 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 RN7SKP182-201ENST00000410772 298 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 AL512326.1-201ENST00000443050 721 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 RN7SKP157-201ENST00000516174 282 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 OR5M7P-201ENST00000526140 972 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 SNORA51-201ENST00000606420 132 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 FAM27D1-201ENST00000612308 341 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 MIR6500-201ENST00000622700 86 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 MIR3651-201ENST00000630427 90 ntBASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 YES1-203ENST00000577961 4554 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC88AQ3V6T2 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 U8.11-201ENST00000384699 133 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 U8.12-201ENST00000384701 133 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AL590806.1-201ENST00000415818 853 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 OR5BE1P-201ENST00000425977 939 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 VN1R32P-201ENST00000452234 905 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 RPL36AP13-201ENST00000457490 317 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 U8.18-201ENST00000459285 133 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 SETP6-201ENST00000479329 568 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AL161729.3-201ENST00000603533 673 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AL353726.1-201ENST00000614041 1000 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 OR5BE1P-202ENST00000641168 1176 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ZNF285B-201ENST00000561698 1767 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 NDUFB4P4-201ENST00000404822 243 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 ARAFP1-201ENST00000422172 605 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 CDY14P-201ENST00000431260 1014 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 UBE2V1P3-201ENST00000439651 417 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 CDY12P-201ENST00000440679 1015 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 NOTCH2P1-201ENST00000443481 624 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 CDY13P-201ENST00000445813 1015 ntBASIC5.24□□□□□ -1.57
CCDC88AQ3V6T2 CDY23P-201ENST00000451661 1014 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms