Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXF1Q12946 AC041039.1-201ENST00000485656 536 ntBASIC3.87□□□□□ -1.79
FOXF1Q12946 AL592156.1-201ENST00000508758 304 ntBASIC3.87□□□□□ -1.79
FOXF1Q12946 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXF1Q12946 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.87□□□□□ -1.79
FOXF1Q12946 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXF1Q12946 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXF1Q12946 TVP23BP1-201ENST00000557500 617 ntBASIC3.87□□□□□ -1.79
FOXF1Q12946 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC3.87□□□□□ -1.79
FOXF1Q12946 AC114781.5-201ENST00000615297 108 ntBASIC3.87□□□□□ -1.79
FOXF1Q12946 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXF1Q12946 MIR7154-201ENST00000620673 73 ntBASIC3.87□□□□□ -1.79
FOXF1Q12946 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXF1Q12946 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.87□□□□□ -1.79
FOXF1Q12946 AC132825.8-201ENST00000640783 297 ntBASIC3.87□□□□□ -1.79
FOXF1Q12946 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXF1Q12946 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXF1Q12946 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXF1Q12946 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
FOXF1Q12946 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
FOXF1Q12946 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 RNU1-15P-201ENST00000353977 144 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 MIR141-201ENST00000384975 95 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 LAP3P1-201ENST00000403648 294 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 Y_RNA.625-201ENST00000411256 107 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 RPL23AP26-201ENST00000412728 464 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 RPL6P29-201ENST00000414863 865 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 P2RY10P2-201ENST00000416730 913 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AL161631.1-201ENST00000417933 486 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 CHIAP3-201ENST00000423668 1133 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 SETP10-201ENST00000424368 814 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXF1Q12946 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 HMGB1P32-201ENST00000425971 565 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 AC013410.1-201ENST00000436223 1232 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
FOXF1Q12946 AC079804.1-201ENST00000461922 436 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AC109327.1-201ENST00000471666 403 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 AC108145.1-201ENST00000503770 153 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 AC008958.1-201ENST00000511047 682 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXF1Q12946 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.86□□□□□ -1.79
FOXF1Q12946 RNA5SP49-201ENST00000516450 115 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.86□□□□□ -1.79
FOXF1Q12946 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.86□□□□□ -1.79
FOXF1Q12946 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXF1Q12946 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 AC023575.1-201ENST00000580510 358 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 KPNA2P3-201ENST00000584190 848 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 IPO5P1-202ENST00000600039 287 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 MIR378J-201ENST00000611988 109 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXF1Q12946 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXF1Q12946 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC3.86□□□□□ -1.79
FOXF1Q12946 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.86□□□□□ -1.79
FOXF1Q12946 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
FOXF1Q12946 MAPK10-304ENST00000641341 3984 ntBASIC3.86□□□□□ -1.79
FOXF1Q12946 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
FOXF1Q12946 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.85□□□□□ -1.79
FOXF1Q12946 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
FOXF1Q12946 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 MIR1179-201ENST00000408703 91 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.85□□□□□ -1.79
FOXF1Q12946 RBMY1KP-201ENST00000423480 476 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 RPL23AP81-201ENST00000455252 467 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 RPS20P4-201ENST00000461659 355 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 NDUFA5P9-201ENST00000472609 340 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.85□□□□□ -1.79
FOXF1Q12946 AC135999.1-201ENST00000478962 479 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 RPS29P19-201ENST00000479709 171 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 AC083829.1-201ENST00000503756 657 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.85□□□□□ -1.79
FOXF1Q12946 AC108475.1-201ENST00000507880 950 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXF1Q12946 MYL12AP1-201ENST00000518490 515 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
FOXF1Q12946 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXF1Q12946 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.85□□□□□ -1.79
FOXF1Q12946 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXF1Q12946 ARF4P1-201ENST00000605447 541 ntBASIC3.85□□□□□ -1.79
FOXF1Q12946 AL445423.1-201ENST00000609941 536 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms