Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5□□□□□ -1.61
HMGCS2P54868 TCEA1P3-201ENST00000443005 880 ntBASIC5□□□□□ -1.61
HMGCS2P54868 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGCS2P54868 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5□□□□□ -1.61
HMGCS2P54868 DDX39BP2-208ENST00000453923 258 ntBASIC5□□□□□ -1.61
HMGCS2P54868 SEPT7P3-201ENST00000455017 621 ntBASIC5□□□□□ -1.61
HMGCS2P54868 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5□□□□□ -1.61
HMGCS2P54868 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5□□□□□ -1.61
HMGCS2P54868 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5□□□□□ -1.61
HMGCS2P54868 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5□□□□□ -1.61
HMGCS2P54868 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5□□□□□ -1.61
HMGCS2P54868 RNA5SP446-201ENST00000515955 82 ntBASIC5□□□□□ -1.61
HMGCS2P54868 RNA5SP303-201ENST00000516192 130 ntBASIC5□□□□□ -1.61
HMGCS2P54868 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5□□□□□ -1.61
HMGCS2P54868 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5□□□□□ -1.61
HMGCS2P54868 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5□□□□□ -1.61
HMGCS2P54868 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5□□□□□ -1.61
HMGCS2P54868 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5□□□□□ -1.61
HMGCS2P54868 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5□□□□□ -1.61
HMGCS2P54868 AC007546.1-201ENST00000619452 559 ntBASIC5□□□□□ -1.61
HMGCS2P54868 OR8B1P-202ENST00000641132 1178 ntBASIC5□□□□□ -1.61
HMGCS2P54868 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5□□□□□ -1.61
HMGCS2P54868 AL133243.3-201ENST00000617415 3004 ntBASIC5□□□□□ -1.61
HMGCS2P54868 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HMGCS2P54868 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HMGCS2P54868 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5□□□□□ -1.61
HMGCS2P54868 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
HMGCS2P54868 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 AP005435.3-201ENST00000531260 3198 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.99□□□□□ -1.61
HMGCS2P54868 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HMGCS2P54868 MIR554-201ENST00000384874 96 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 RNA5SP171-201ENST00000391071 115 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 RN7SKP182-201ENST00000410772 298 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.99□□□□□ -1.61
HMGCS2P54868 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.99□□□□□ -1.61
HMGCS2P54868 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.99□□□□□ -1.61
HMGCS2P54868 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.99□□□□□ -1.61
HMGCS2P54868 RPEP2-201ENST00000432149 701 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 UBE2V2P3-201ENST00000433562 437 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 AL356276.2-201ENST00000435919 558 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 GTF3AP5-201ENST00000442645 697 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.99□□□□□ -1.61
HMGCS2P54868 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.99□□□□□ -1.61
HMGCS2P54868 GLRXP2-201ENST00000555594 321 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.99□□□□□ -1.61
HMGCS2P54868 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.99□□□□□ -1.61
HMGCS2P54868 MIR3158-1-201ENST00000583596 81 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 AC002069.2-201ENST00000603580 883 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 AC107308.1-201ENST00000615897 301 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.99□□□□□ -1.61
HMGCS2P54868 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
HMGCS2P54868 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.99□□□□□ -1.61
HMGCS2P54868 AC245100.2-201ENST00000454544 1679 ntBASIC4.99□□□□□ -1.61
HMGCS2P54868 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
HMGCS2P54868 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.98□□□□□ -1.61
HMGCS2P54868 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
HMGCS2P54868 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
HMGCS2P54868 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
HMGCS2P54868 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.98□□□□□ -1.61
HMGCS2P54868 AP000473.2-201ENST00000602659 1537 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HMGCS2P54868 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
HMGCS2P54868 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HMGCS2P54868 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HMGCS2P54868 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.98□□□□□ -1.61
HMGCS2P54868 AL589994.1-201ENST00000404962 340 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 CYCSP19-201ENST00000411715 316 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC108032.1-201ENST00000416706 207 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC062016.2-201ENST00000420950 676 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 VN1R32P-201ENST00000452234 905 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HMGCS2P54868 RPL7P22-201ENST00000466005 733 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 RN7SL817P-201ENST00000480777 288 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.98□□□□□ -1.61
HMGCS2P54868 VN1R105P-201ENST00000486595 910 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC069304.1-201ENST00000491593 704 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AP002812.1-201ENST00000495378 474 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AP001960.1-201ENST00000506494 658 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.98□□□□□ -1.61
HMGCS2P54868 RNU6-551P-201ENST00000516661 103 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.98□□□□□ -1.61
HMGCS2P54868 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.98□□□□□ -1.61
HMGCS2P54868 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
HMGCS2P54868 RN7SL703P-201ENST00000578485 302 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 CCDC58P3-201ENST00000590792 430 ntBASIC4.98□□□□□ -1.61
HMGCS2P54868 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC4.98□□□□□ -1.61
HMGCS2P54868 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms