Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RPL7P50-201ENST00000600588 727 ntBASIC4.36□□□□□ -1.71
CXCL12P48061 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.36□□□□□ -1.71
CXCL12P48061 AL021997.2-201ENST00000615674 271 ntBASIC4.36□□□□□ -1.71
CXCL12P48061 AC009950.2-201ENST00000636548 183 ntBASIC4.36□□□□□ -1.71
CXCL12P48061 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CXCL12P48061 MAPK10-286ENST00000641208 8747 ntBASIC4.36□□□□□ -1.71
CXCL12P48061 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
CXCL12P48061 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CXCL12P48061 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CXCL12P48061 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.36□□□□□ -1.71
CXCL12P48061 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CXCL12P48061 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.35□□□□□ -1.71
CXCL12P48061 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CXCL12P48061 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 OR56B2P-201ENST00000317102 954 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CXCL12P48061 SNORA71.3-201ENST00000362582 128 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 SNORD46.1-201ENST00000364139 104 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CXCL12P48061 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.35□□□□□ -1.71
CXCL12P48061 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CXCL12P48061 MTCO1P54-201ENST00000430139 712 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 UBE2V1P3-201ENST00000439651 417 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.35□□□□□ -1.71
CXCL12P48061 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.35□□□□□ -1.71
CXCL12P48061 RPS4XP12-201ENST00000461747 709 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 RPL23AP2-201ENST00000471227 466 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.35□□□□□ -1.71
CXCL12P48061 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.35□□□□□ -1.71
CXCL12P48061 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.35□□□□□ -1.71
CXCL12P48061 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.35□□□□□ -1.71
CXCL12P48061 IFITM8P-201ENST00000522529 394 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 AC138832.1-201ENST00000522871 556 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 DYNLL1P4-201ENST00000549314 266 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.35□□□□□ -1.71
CXCL12P48061 DPRXP4-201ENST00000578053 568 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 RN7SL703P-201ENST00000578485 302 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 AL137246.1-201ENST00000607072 977 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 AC090912.3-201ENST00000609775 533 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 AC244100.1-202ENST00000621554 382 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.35□□□□□ -1.71
CXCL12P48061 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 AL627171.1-201ENST00000618845 1308 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CXCL12P48061 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.35□□□□□ -1.71
CXCL12P48061 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CXCL12P48061 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.35□□□□□ -1.71
CXCL12P48061 NXPH1-205ENST00000602349 1953 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
CXCL12P48061 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CXCL12P48061 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CXCL12P48061 Y_RNA.333-201ENST00000365274 102 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 SNORA5.1-201ENST00000384275 131 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 AP000357.1-201ENST00000409926 1165 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.34□□□□□ -1.71
CXCL12P48061 CRYBB2P1-203ENST00000415709 538 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 CKS1BP6-201ENST00000424932 240 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AC018644.1-201ENST00000429934 551 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 AL050321.1-201ENST00000432363 400 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.34□□□□□ -1.71
CXCL12P48061 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 FTH1P21-201ENST00000512179 511 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 IGKV2-23-201ENST00000518729 323 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.34□□□□□ -1.71
CXCL12P48061 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.34□□□□□ -1.71
CXCL12P48061 AL606490.9-201ENST00000603331 271 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.34□□□□□ -1.71
CXCL12P48061 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.34□□□□□ -1.71
CXCL12P48061 CR392039.5-201ENST00000623201 510 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AP003400.2-201ENST00000624036 666 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 AC132825.8-201ENST00000640783 297 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 OR5AQ1P-202ENST00000641257 1534 ntBASIC4.34□□□□□ -1.71
CXCL12P48061 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.34□□□□□ -1.71
CXCL12P48061 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CXCL12P48061 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.71
CXCL12P48061 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CXCL12P48061 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms