Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXC9P31274 OR13Z1P-201ENST00000416141 834 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 SETP10-201ENST00000424368 814 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXC9P31274 MRPL50P1-201ENST00000431951 384 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXC9P31274 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXC9P31274 AC138409.2-202ENST00000507274 458 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 NPM1P21-201ENST00000513394 762 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 NPM1P52-201ENST00000518264 846 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXC9P31274 AC105233.3-201ENST00000531125 744 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXC9P31274 AC012414.2-201ENST00000559474 187 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 AL136370.1-201ENST00000608166 691 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 AL109620.1-201ENST00000618738 1197 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXC9P31274 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
HOXC9P31274 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXC9P31274 AL731532.2-201ENST00000623542 1953 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 RNU6-883P-201ENST00000384597 107 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.75□□□□□ -1.49
HOXC9P31274 RNU6-628P-201ENST00000410675 107 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AC098592.2-201ENST00000413158 265 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXC9P31274 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXC9P31274 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.75□□□□□ -1.49
HOXC9P31274 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXC9P31274 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXC9P31274 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXC9P31274 OR9N1P-201ENST00000491296 333 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXC9P31274 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXC9P31274 TMF1P1-201ENST00000576058 373 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXC9P31274 RPL7P50-201ENST00000600588 727 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AC008966.2-201ENST00000606157 453 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AC015802.5-201ENST00000607478 399 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 AC008785.1-201ENST00000624475 456 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXC9P31274 AC008013.2-202ENST00000637965 364 ntBASIC5.75□□□□□ -1.49
HOXC9P31274 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HOXC9P31274 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXC9P31274 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXC9P31274 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXC9P31274 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXC9P31274 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 SNORA40.4-201ENST00000390971 128 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 RN7SKP182-201ENST00000410772 298 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 AL356968.2-201ENST00000412769 1257 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 AC009237.10-201ENST00000414112 510 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC9P31274 CR848007.2-201ENST00000424918 787 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 ZFAND6P1-201ENST00000434138 605 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXC9P31274 AC104849.1-201ENST00000462623 405 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXC9P31274 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
HOXC9P31274 AC138832.1-201ENST00000522871 556 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 RN7SL703P-201ENST00000578485 302 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 HMGB2P1-201ENST00000591146 634 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 Z98200.1-201ENST00000607298 470 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 AC007546.2-201ENST00000623996 360 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 AC100871.1-201ENST00000507871 1456 ntBASIC5.74□□□□□ -1.49
HOXC9P31274 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXC9P31274 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXC9P31274 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXC9P31274 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 AC027228.2-201ENST00000567141 2154 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 RLIMP1-201ENST00000339626 1680 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 RNU1-20P-201ENST00000363314 162 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 MIR23B-201ENST00000384832 97 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms