Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CEACAMP10-202ENST00000495431 496 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC023050.1-201ENST00000498198 304 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 HMGN1P9-201ENST00000515212 298 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC009094.1-201ENST00000564443 426 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC122134.1-201ENST00000565664 1104 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 ATP5F1P7-201ENST00000567330 760 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 RN7SL290P-201ENST00000578661 300 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC061975.8-201ENST00000587058 721 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC108738.1-201ENST00000603703 237 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 STMN1P1-201ENST00000617809 440 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AL731566.2-201ENST00000618971 317 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AP002782.1-201ENST00000623107 614 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC021106.3-201ENST00000623925 531 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC004777.1-201ENST00000624317 287 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 OR1S1-201ENST00000624470 978 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 SEC63P2-201ENST00000503863 1939 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 THAP12P5-201ENST00000405864 2275 ntBASIC5.18□□□□□ -1.58
VPS4AQ9UN37 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS4AQ9UN37 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC007996.1-201ENST00000620414 2821 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 U8.4-201ENST00000363626 134 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 RNU1-77P-201ENST00000390868 162 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AL034374.1-201ENST00000406329 351 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC246680.2-201ENST00000422106 389 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 C1DP1-201ENST00000426049 402 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 RPL7AP49-201ENST00000429522 581 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 HIGD1AP4-201ENST00000430194 280 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AL591438.1-201ENST00000433508 581 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 TCEA1P3-201ENST00000443005 880 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC016772.1-201ENST00000444170 1261 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC112492.1-201ENST00000449607 712 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 MRPL35P4-201ENST00000453682 566 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 HIGD1AP8-201ENST00000453927 274 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC006463.2-201ENST00000473326 348 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 PGAM1P13-201ENST00000507497 754 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 PRELID3BP4-201ENST00000515476 571 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AL671862.1-201ENST00000515851 349 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC083923.1-201ENST00000523708 376 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 DUXAP6-201ENST00000553858 601 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 MIR3691-201ENST00000578066 90 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 MIR3936-201ENST00000584304 110 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 ELOCP28-201ENST00000590044 317 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 VN1R78P-201ENST00000597393 564 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC009237.15-201ENST00000610252 501 ntBASIC5.17□□□□□ -1.58
VPS4AQ9UN37 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS4AQ9UN37 AC079416.3-201ENST00000624479 549 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms