Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 BUD31P1-201ENST00000521828 359 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC004923.2-201ENST00000529649 369 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC006518.1-201ENST00000541449 943 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL049870.4-201ENST00000555741 486 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL049839.1-201ENST00000556151 657 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC084759.1-201ENST00000561168 290 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AGGF1P9-201ENST00000561884 913 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC093510.2-201ENST00000562820 896 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC122134.1-201ENST00000565664 1104 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 DNAJC19P3-201ENST00000594491 331 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC005776.1-201ENST00000603164 290 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC093765.1-201ENST00000603758 881 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 BNIP3P19-201ENST00000605397 577 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 TMEM30CP-203ENST00000637814 1035 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC011755.1-201ENST00000623763 2049 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 MAPK10-320ENST00000641462 6696 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL049697.2-201ENST00000403708 294 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 RN7SKP16-201ENST00000410180 299 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 RNA5SP345-201ENST00000410646 108 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL590806.1-201ENST00000415818 853 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 QRSL1P2-201ENST00000418582 964 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 RPS6P14-201ENST00000425165 719 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 NDUFA5P10-201ENST00000432147 357 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 RPS17P2-201ENST00000461663 408 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 OR52A4P-201ENST00000472867 958 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC026979.1-201ENST00000492525 396 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC104971.1-201ENST00000495117 578 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC016550.1-201ENST00000505348 785 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 IGKV2D-10-201ENST00000520194 281 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 OSBPL9P3-201ENST00000534523 595 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 SNORA74C-1-201ENST00000580726 201 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 MIR4715-201ENST00000584117 79 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC009704.2-201ENST00000618739 483 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL022401.1-201ENST00000619498 108 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 BX005214.3-202ENST00000619809 325 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AL391262.2-201ENST00000622466 494 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 FRG1DP-201ENST00000635586 771 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 TCP1P3-201ENST00000414406 1498 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC008758.3-201ENST00000507003 1829 ntBASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC3Q9BQI4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 HSPA8P17-201ENST00000427029 1382 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 SNORA70F-201ENST00000384142 135 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 RNU4-31P-201ENST00000384211 141 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 RPS27AP7-201ENST00000422792 455 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms