Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.16□□□□□ -1.58
SCN4AP35499 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.16□□□□□ -1.58
SCN4AP35499 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SCN4AP35499 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SCN4AP35499 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SCN4AP35499 AC006042.3-201ENST00000454684 1469 ntBASIC5.16□□□□□ -1.58
SCN4AP35499 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SCN4AP35499 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SCN4AP35499 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SCN4AP35499 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.16□□□□□ -1.58
SCN4AP35499 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.16□□□□□ -1.58
SCN4AP35499 AC104978.1-201ENST00000449387 391 ntBASIC5.16□□□□□ -1.58
SCN4AP35499 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.16□□□□□ -1.58
SCN4AP35499 RN7SKP141-201ENST00000516167 338 ntBASIC5.16□□□□□ -1.58
SCN4AP35499 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.16□□□□□ -1.58
SCN4AP35499 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.16□□□□□ -1.58
SCN4AP35499 HMGN2P47-201ENST00000559378 272 ntBASIC5.16□□□□□ -1.58
SCN4AP35499 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.16□□□□□ -1.58
SCN4AP35499 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.16□□□□□ -1.58
SCN4AP35499 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.16□□□□□ -1.58
SCN4AP35499 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.16□□□□□ -1.58
SCN4AP35499 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SCN4AP35499 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SCN4AP35499 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SCN4AP35499 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SCN4AP35499 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
SCN4AP35499 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.15□□□□□ -1.58
SCN4AP35499 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
SCN4AP35499 RPS20P14-201ENST00000412545 360 ntBASIC5.15□□□□□ -1.59
SCN4AP35499 RAB9AP3-201ENST00000412737 573 ntBASIC5.15□□□□□ -1.59
SCN4AP35499 AC068533.1-201ENST00000418542 415 ntBASIC5.15□□□□□ -1.59
SCN4AP35499 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.15□□□□□ -1.59
SCN4AP35499 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.15□□□□□ -1.59
SCN4AP35499 RAB9AP1-201ENST00000449393 573 ntBASIC5.15□□□□□ -1.59
SCN4AP35499 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.15□□□□□ -1.59
SCN4AP35499 AL022393.1-201ENST00000625142 1677 ntBASIC5.15□□□□□ -1.59
SCN4AP35499 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.15□□□□□ -1.59
SCN4AP35499 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.15□□□□□ -1.59
SCN4AP35499 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.14□□□□□ -1.59
SCN4AP35499 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.14□□□□□ -1.59
SCN4AP35499 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 SNORA5A-201ENST00000384111 134 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.14□□□□□ -1.59
SCN4AP35499 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 BTF3P6-201ENST00000448054 499 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 ABCF2P2-201ENST00000450549 296 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 AC104164.2-201ENST00000496953 495 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.14□□□□□ -1.59
SCN4AP35499 IGKV2D-19-201ENST00000523346 262 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.14□□□□□ -1.59
SCN4AP35499 AC005858.4-201ENST00000623191 700 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 AC015871.5-202ENST00000623252 701 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 AC008013.2-202ENST00000637965 364 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.14□□□□□ -1.59
SCN4AP35499 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 VPS35P1-201ENST00000563400 1518 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.14□□□□□ -1.59
SCN4AP35499 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SCN4AP35499 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.14□□□□□ -1.59
SCN4AP35499 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SCN4AP35499 AC007529.1-201ENST00000418574 2178 ntBASIC5.14□□□□□ -1.59
SCN4AP35499 RNU1-63P-201ENST00000383902 164 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 BOLA3P4-201ENST00000418151 400 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SCN4AP35499 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.13□□□□□ -1.59
SCN4AP35499 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.13□□□□□ -1.59
SCN4AP35499 AC012123.2-201ENST00000485809 248 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.13□□□□□ -1.59
SCN4AP35499 MIR7151-201ENST00000617477 60 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SCN4AP35499 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.13□□□□□ -1.59
SCN4AP35499 CASC19-206ENST00000641028 1430 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SCN4AP35499 CASC19-261ENST00000641853 1638 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SCN4AP35499 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SCN4AP35499 MIR634-201ENST00000385208 97 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 TCEA1P4-201ENST00000415066 844 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 GNG5P5-201ENST00000420444 220 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SCN4AP35499 Z74021.1-201ENST00000423610 407 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.13□□□□□ -1.59
SCN4AP35499 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SCN4AP35499 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.13□□□□□ -1.59
SCN4AP35499 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.13□□□□□ -1.59
SCN4AP35499 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.13□□□□□ -1.59
SCN4AP35499 RPL23AP46-201ENST00000438548 490 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.13□□□□□ -1.59
SCN4AP35499 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.13□□□□□ -1.59
SCN4AP35499 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
SCN4AP35499 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.13□□□□□ -1.59
SCN4AP35499 AC096553.1-201ENST00000605169 829 ntBASIC5.13□□□□□ -1.59
SCN4AP35499 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.13□□□□□ -1.59
SCN4AP35499 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SCN4AP35499 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms