Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNA5SP130-201ENST00000364431 114 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 MIR921-201ENST00000401133 56 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 SNORA74C-2-201ENST00000411179 201 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXC9P31274 RPS26P4-201ENST00000431743 355 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXC9P31274 AL356276.2-201ENST00000435919 558 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 MTCO3P43-201ENST00000440974 771 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.78□□□□□ -1.48
HOXC9P31274 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 AC128716.1-201ENST00000475129 166 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 RPL21P129-201ENST00000491732 478 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXC9P31274 GOLGA5P1-201ENST00000507317 980 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AL592156.1-201ENST00000508758 304 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXC9P31274 AC099522.1-202ENST00000514718 367 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 HMGB1P23-201ENST00000518743 568 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.78□□□□□ -1.48
HOXC9P31274 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 AL160290.3-201ENST00000604869 165 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AL162233.1-201ENST00000620014 944 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AP000720.1-201ENST00000625091 483 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 AL121839.2-201ENST00000565058 6943 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AL592182.3-201ENST00000642132 3304 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 AL133243.3-201ENST00000617415 3004 ntBASIC5.78□□□□□ -1.48
HOXC9P31274 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HOXC9P31274 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 IQCB2P-201ENST00000401788 1633 ntBASIC5.77□□□□□ -1.48
HOXC9P31274 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXC9P31274 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXC9P31274 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 CUL4AP1-201ENST00000514750 1863 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HOXC9P31274 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 RNU6-670P-201ENST00000364312 104 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 AL358178.1-201ENST00000407698 397 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC062016.2-201ENST00000420950 676 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 SETP9-201ENST00000423837 832 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 OR2AH1P-201ENST00000425717 928 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 RPL21P89-201ENST00000444021 467 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 DDX39BP2-208ENST00000453923 258 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 RPL5P32-201ENST00000454085 879 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 SNORA84-201ENST00000459229 133 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.77□□□□□ -1.49
HOXC9P31274 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 SAP18P1-201ENST00000512058 390 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 KCTD9P2-201ENST00000512203 1013 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 RNA5SP73-201ENST00000516744 108 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.77□□□□□ -1.49
HOXC9P31274 MED28P5-201ENST00000528254 438 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC010201.1-201ENST00000605051 540 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 IMMP1LP1-201ENST00000605170 488 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AC073111.2-201ENST00000605657 1075 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AC091905.2-201ENST00000623143 306 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AC103798.2-201ENST00000624292 632 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.77□□□□□ -1.49
HOXC9P31274 AC107068.1-201ENST00000563286 4218 ntBASIC5.77□□□□□ -1.49
HOXC9P31274 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXC9P31274 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXC9P31274 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
HOXC9P31274 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HOXC9P31274 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
HOXC9P31274 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 AL022393.1-201ENST00000625142 1677 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXC9P31274 RNA5SP307-201ENST00000362863 116 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 RNA5SP175-201ENST00000364275 119 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.76□□□□□ -1.49
HOXC9P31274 RNU6-152P-201ENST00000384037 107 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 AL589655.1-201ENST00000405398 482 ntBASIC5.76□□□□□ -1.49
HOXC9P31274 AL590806.1-201ENST00000415818 853 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 299.8 ms