Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC026348.1-201ENST00000462549 1053 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC010326.1-201ENST00000462726 602 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 ATG10-208ENST00000513634 618 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC006064.5-201ENST00000541782 248 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC069061.3-201ENST00000582254 823 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AL139395.1-201ENST00000603662 160 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC090510.2-201ENST00000617465 629 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC008785.1-201ENST00000624475 456 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC107027.3-201ENST00000565095 3473 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC42Q96M95 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC010132.2-201ENST00000295493 1043 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC42Q96M95 RNA5SP502-201ENST00000362694 119 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 RNU1-130P-201ENST00000363930 160 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 SNORD113.2-201ENST00000364166 89 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC013268.2-201ENST00000420753 337 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 RPL7AP25-201ENST00000423357 805 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 NANOGP6-201ENST00000429190 847 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 CEACAMP1-201ENST00000434624 1035 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 RPL36AP15-201ENST00000444514 266 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 CEACAMP6-201ENST00000452007 574 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC006517.1-201ENST00000480485 328 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 RPS6P4-201ENST00000494693 758 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC104164.2-201ENST00000496953 495 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC42Q96M95 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 HNRNPKP5-201ENST00000515300 253 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC090281.1-201ENST00000523019 276 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 AL109766.1-201ENST00000555080 552 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC027176.2-201ENST00000559166 746 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 AL139041.1-201ENST00000605480 610 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC012603.1-201ENST00000606424 528 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC100847.1-201ENST00000611316 481 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC015922.4-201ENST00000612568 690 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AC026368.1-201ENST00000614934 690 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 RMST_9.1-201ENST00000619945 193 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AP005019.3-201ENST00000620418 560 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 AL356121.2-201ENST00000624715 780 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 ZNF962P-201ENST00000443465 3140 ntBASIC4.62□□□□□ -1.67
CCDC42Q96M95 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC42Q96M95 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CCDC42Q96M95 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 SNORA70F-201ENST00000384142 135 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 RNU6-729P-201ENST00000384399 107 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 HSPD1P16-201ENST00000402302 394 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 AL139095.3-201ENST00000419672 1203 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 UQCRBP1-201ENST00000421129 336 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 NDUFA5P1-201ENST00000433858 341 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 VN1R54P-201ENST00000435210 1049 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 RPL23AP89-201ENST00000439324 255 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 DHFRP3-201ENST00000455595 559 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 KCTD9P6-201ENST00000522306 950 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC42Q96M95 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 RN7SL690P-201ENST00000582087 240 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 SDR42E1P1-201ENST00000611327 477 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC42Q96M95 AC007546.1-201ENST00000619452 559 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 MIR7702-201ENST00000621931 59 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 CR382285.2-201ENST00000624662 1495 ntBASIC4.61□□□□□ -1.67
CCDC42Q96M95 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms