Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.71□□□□□ -1.65
VPS39Q96JC1 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS39Q96JC1 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS39Q96JC1 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
VPS39Q96JC1 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 RN7SKP115-201ENST00000363177 317 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 CHEK2P3-201ENST00000416118 248 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 MTND4P11-201ENST00000417020 1058 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 OR2AM1P-201ENST00000422137 422 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 RWDD4P2-201ENST00000426392 563 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 CEACAMP7-201ENST00000444105 496 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC112498.1-201ENST00000444401 332 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AP002345.1-201ENST00000456493 928 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 RN7SL214P-201ENST00000487317 265 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 RWDD4P1-201ENST00000488019 565 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC104971.1-201ENST00000495117 578 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 GAPDHP56-201ENST00000506031 988 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC091868.1-201ENST00000508746 304 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 HMGB1P47-201ENST00000511281 589 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 RNA5SP360-201ENST00000516555 118 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 GCSHP4-201ENST00000538792 439 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC063949.1-201ENST00000552900 865 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AP005119.2-201ENST00000579735 1105 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 MIMT1-201ENST00000597105 1050 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC005520.3-201ENST00000602874 370 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 ABI1P1-201ENST00000603375 1120 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC012557.1-201ENST00000607115 611 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC005086.4-201ENST00000623065 213 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AC067852.7-201ENST00000623270 535 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 AP003072.4-201ENST00000624580 310 ntBASIC4.71□□□□□ -1.66
VPS39Q96JC1 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
VPS39Q96JC1 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS39Q96JC1 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 RNU1-82P-201ENST00000390851 165 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 NDUFA5P1-201ENST00000433858 341 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AL031663.1-201ENST00000437445 219 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 CBX1P4-201ENST00000439415 457 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC010733.1-201ENST00000451515 401 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AURKAPS2-201ENST00000454983 333 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 RPS5P7-201ENST00000456664 608 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC110749.1-201ENST00000462007 357 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC022795.1-201ENST00000473808 480 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC023050.1-201ENST00000498198 304 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC023158.1-201ENST00000561632 1025 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 MTATP6P25-201ENST00000574491 261 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC011487.3-201ENST00000593607 453 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC087763.1-201ENST00000603391 286 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC010857.1-201ENST00000606398 594 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS39Q96JC1 OR7A19P-201ENST00000608051 733 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 FAM27B-201ENST00000610601 213 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC016769.4-201ENST00000616893 535 ntBASIC4.7□□□□□ -1.66
VPS39Q96JC1 AC112694.2-201ENST00000623697 768 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms