Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC010374.1-201ENST00000503762 1237 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 RN7SKP66-201ENST00000516681 231 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 PCNAP1-202ENST00000595299 752 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC069307.1-201ENST00000602820 447 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC087763.1-201ENST00000603391 286 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 uc_338.18-201ENST00000615451 175 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC099669.2-201ENST00000616549 437 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AL158196.1-201ENST00000616786 434 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC234782.5-201ENST00000617723 324 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 U6.48-201ENST00000618523 106 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AK6-205ENST00000618980 483 ntTSL 2 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC002044.3-201ENST00000623314 541 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC024023.1-201ENST00000624530 922 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC135068.12-201ENST00000637370 931 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AL596275.2-204ENST00000641628 552 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AL596275.2-206ENST00000641957 626 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 EIF2AP4-201ENST00000424793 1781 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC131971.1-201ENST00000332881 1482 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC022031.1-201ENST00000585985 2593 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 MAPK10-303ENST00000641324 3959 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 DHX9P1-201ENST00000436565 3076 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 RPL23P2-201ENST00000320371 421 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 IL6STP1-201ENST00000346911 1020 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 SNORA73.1-201ENST00000363107 205 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 U8.4-201ENST00000363626 134 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 RN7SKP113-201ENST00000363891 295 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AC023347.2-201ENST00000433994 462 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ARL4AP3-201ENST00000441452 574 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 Z80107.2-201ENST00000445127 392 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 HMGB1P5-202ENST00000451497 985 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AC022795.1-201ENST00000473808 480 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 RPS4XP20-201ENST00000505751 772 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AC021146.3-201ENST00000511911 260 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 RNA5SP373-201ENST00000517271 95 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 IGKV2-36-201ENST00000519999 223 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 RBM22P1-201ENST00000578589 1214 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 AL353600.1-201ENST00000608148 251 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 MAPK10-263ENST00000641052 4307 ntBASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.54□□□□□ -1.68
ZNF540Q8NDQ6 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 RNU1-43P-201ENST00000365052 165 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 SNORD96B-201ENST00000386148 79 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AL589647.1-201ENST00000402485 466 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AL589655.1-201ENST00000405398 482 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 U3.36-201ENST00000408418 213 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC004022.2-201ENST00000413824 193 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 LINC01881-201ENST00000416103 412 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 RGS17P1-201ENST00000423358 553 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms