Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC127024.5-201ENST00000580085 462 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC010857.1-201ENST00000606398 594 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC091046.2-201ENST00000620775 665 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC091932.2-201ENST00000623014 291 ntBASIC4.99□□□□□ -1.61
COL28A1Q2UY09 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL28A1Q2UY09 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 GTF2H2B-203ENST00000508065 1432 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC006206.1-201ENST00000544842 3387 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC104623.2-202ENST00000623477 4002 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 Z95331.1-201ENST00000623075 23112 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL078621.3-201ENST00000623707 2042 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RNU5B-4P-201ENST00000363508 111 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL359837.1-201ENST00000381357 287 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MIR105-1-201ENST00000385222 81 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MTND4P11-201ENST00000417020 1058 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MTND2P2-201ENST00000434633 945 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC073143.1-201ENST00000436316 395 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL096803.2-201ENST00000450032 677 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 GTF2IP12-201ENST00000456547 356 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RNU7-27P-201ENST00000459281 62 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 PPIAP21-201ENST00000464473 501 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC006967.1-201ENST00000467608 589 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 HMGB1P38-201ENST00000490557 577 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL049874.2-201ENST00000492636 288 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC026414.1-201ENST00000504046 698 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC021106.1-201ENST00000509020 1058 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC109464.1-201ENST00000511091 819 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RNU6-415P-201ENST00000516252 97 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 SETP1-201ENST00000556014 845 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC084759.1-201ENST00000561168 290 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MIR4277-201ENST00000578298 84 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MIR548Y-201ENST00000582739 110 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MIR4691-201ENST00000583764 85 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC096947.1-201ENST00000603233 470 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC018754.1-201ENST00000607486 925 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 OR7A19P-201ENST00000608051 733 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL512427.1-201ENST00000618593 349 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC010608.3-201ENST00000625048 527 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC013437.2-201ENST00000639587 677 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC073869.8-201ENST00000641806 335 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 ZNF849P-201ENST00000594711 1566 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC112198.2-201ENST00000426589 6996 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AL022322.2-201ENST00000624072 20397 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 AC083899.1-201ENST00000454465 3819 ntBASIC4.98□□□□□ -1.61
COL28A1Q2UY09 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL28A1Q2UY09 ZNF652P1-201ENST00000442420 1309 ntBASIC4.97□□□□□ -1.61
COL28A1Q2UY09 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms