Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 MIR449B-201ENST00000384995 97 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AP000619.3-201ENST00000535634 1127 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AL161729.3-201ENST00000603533 673 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC096577.2-201ENST00000611455 153 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AL121890.2-201ENST00000617644 465 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.61□□□□□ -1.67
COL4A4P53420 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL4A4P53420 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL4A4P53420 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
COL4A4P53420 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 EOGT-210ENST00000615922 1931 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AL513548.1-201ENST00000562904 1724 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 AC233968.1-201ENST00000611212 1300 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 CRYBB2P1-203ENST00000415709 538 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 UBE2V1P3-201ENST00000439651 417 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.61□□□□□ -1.67
COL4A4P53420 RNA5SP246-201ENST00000458909 119 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AC108145.1-201ENST00000503770 153 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 PARP4P3-201ENST00000510265 317 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 OR5D2P-201ENST00000524390 911 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AC107982.3-201ENST00000584957 985 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.61□□□□□ -1.67
COL4A4P53420 AC012468.1-201ENST00000604888 430 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC007179.3-201ENST00000604976 235 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC018816.2-201ENST00000621460 353 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 AC008013.2-202ENST00000637965 364 ntBASIC4.61□□□□□ -1.67
COL4A4P53420 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 HSPD1P14-201ENST00000432666 1618 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AL133243.3-201ENST00000617415 3004 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC4.6□□□□□ -1.67
COL4A4P53420 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL4A4P53420 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 AC233289.1-201ENST00000403700 508 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 ARAFP1-201ENST00000422172 605 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 PPIAP13-201ENST00000434706 478 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 TBCAP1-201ENST00000436520 327 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AL500522.2-201ENST00000448562 343 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AF213884.1-201ENST00000488102 463 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 AC010374.1-201ENST00000503762 1237 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AC099522.1-202ENST00000514718 367 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.6□□□□□ -1.67
COL4A4P53420 TVP23BP1-201ENST00000557500 617 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.6□□□□□ -1.67
COL4A4P53420 AC027455.1-201ENST00000574104 594 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.6□□□□□ -1.67
COL4A4P53420 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.6□□□□□ -1.67
COL4A4P53420 FAM27D1-201ENST00000612308 341 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AC006213.4-201ENST00000616184 634 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 AC015967.1-201ENST00000619893 476 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 MIR6500-201ENST00000622700 86 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 FP325313.1-201ENST00000638228 703 ntBASIC4.6□□□□□ -1.67
COL4A4P53420 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL4A4P53420 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.6□□□□□ -1.67
COL4A4P53420 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL4A4P53420 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC4.59□□□□□ -1.67
COL4A4P53420 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL4A4P53420 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL4A4P53420 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.59□□□□□ -1.67
COL4A4P53420 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL4A4P53420 MIR483-201ENST00000385070 76 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 ENSAP1-201ENST00000392855 326 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 AP000357.1-201ENST00000409926 1165 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms